miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 5617 0.71 0.757019
Target:  5'- cGGCAAGUugcgcggUGGggGCgUGcccCGCAGACCCc -3'
miRNA:   3'- -CUGUUCG-------ACCuuCG-GCu--GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 38605 0.71 0.776396
Target:  5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3'
miRNA:   3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 233498 0.71 0.776396
Target:  5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3'
miRNA:   3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 70834 0.71 0.785437
Target:  5'- cGGCAcGCUGGcGGGCCGAcCGCcgcGCCCu -3'
miRNA:   3'- -CUGUuCGACC-UUCGGCU-GCGuc-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 2283 0.71 0.785437
Target:  5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3'
miRNA:   3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 197176 0.71 0.785437
Target:  5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3'
miRNA:   3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 168345 0.71 0.785437
Target:  5'- aAUGAGCUGGucGCCcuGAUGCAGAUgCa -3'
miRNA:   3'- cUGUUCGACCuuCGG--CUGCGUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 210383 0.71 0.785437
Target:  5'- gGACcuGCUGcGAaaaguGGCCGGCGaagauaAGGCCCa -3'
miRNA:   3'- -CUGuuCGAC-CU-----UCGGCUGCg-----UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 113334 0.71 0.785437
Target:  5'- cGGCAAGCUGGGucgCGACGU--GCCCg -3'
miRNA:   3'- -CUGUUCGACCUucgGCUGCGucUGGG- -5'
29946 5' -55.6 NC_006273.1 + 116694 0.71 0.794347
Target:  5'- -cCGAGCUGGuu-UCG-CGCGGGCCCg -3'
miRNA:   3'- cuGUUCGACCuucGGCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 135602 0.71 0.794347
Target:  5'- gGGCGAGCUGGAAGagGACGaAGACa- -3'
miRNA:   3'- -CUGUUCGACCUUCggCUGCgUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 28323 0.71 0.794347
Target:  5'- uACuGGCUGGAAcGUCaGCGCcGACCCg -3'
miRNA:   3'- cUGuUCGACCUU-CGGcUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 109306 0.71 0.794347
Target:  5'- cGACGAgguggaccGCUGGAuccggcacgcGGCCGGCGUAGAacggCCg -3'
miRNA:   3'- -CUGUU--------CGACCU----------UCGGCUGCGUCUg---GG- -5'
29946 5' -55.6 NC_006273.1 + 68363 0.71 0.794347
Target:  5'- cGACGAGCaGcuGAGCaCGGCGCAGaACCUg -3'
miRNA:   3'- -CUGUUCGaCc-UUCG-GCUGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 213952 0.71 0.803117
Target:  5'- -gUAAGCUGGAAGgCGACGaGGACg- -3'
miRNA:   3'- cuGUUCGACCUUCgGCUGCgUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 148707 0.71 0.803117
Target:  5'- cGGCAAGCUGGAGGUgGAacccUGCGcGCUCu -3'
miRNA:   3'- -CUGUUCGACCUUCGgCU----GCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 145003 0.71 0.806584
Target:  5'- cACAGGCUGGuguaucuccagucGUCGGCGCGGcauCCCa -3'
miRNA:   3'- cUGUUCGACCuu-----------CGGCUGCGUCu--GGG- -5'
29946 5' -55.6 NC_006273.1 + 81762 0.7 0.81174
Target:  5'- -cCGGGCUGcGAAcGCUGACGCcGGCCa -3'
miRNA:   3'- cuGUUCGAC-CUU-CGGCUGCGuCUGGg -5'
29946 5' -55.6 NC_006273.1 + 36842 0.7 0.820206
Target:  5'- aGACuGGCagGGAcacgcgcuacguAGCCGGuCGCGGACCg -3'
miRNA:   3'- -CUGuUCGa-CCU------------UCGGCU-GCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 47799 0.7 0.828509
Target:  5'- uGCGAGCUGuacggggaauacGAGcGCCGGuuCGCGGACCUg -3'
miRNA:   3'- cUGUUCGAC------------CUU-CGGCU--GCGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.