miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 130863 0.7 0.836642
Target:  5'- cACAAGCUGucacuGCCG-CGC-GACCCg -3'
miRNA:   3'- cUGUUCGACcuu--CGGCuGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 61979 0.7 0.836642
Target:  5'- uGAC-GGCUuuccaGAAGCUGuuGCAGACCCu -3'
miRNA:   3'- -CUGuUCGAc----CUUCGGCugCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163964 0.7 0.839846
Target:  5'- -uUAAGCUGGAccuguugcgcaugauAGCCGuguCGCGcACCCg -3'
miRNA:   3'- cuGUUCGACCU---------------UCGGCu--GCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 199011 0.69 0.852369
Target:  5'- gGAUAAGUUGGugcGGCUGuCGCGcGACCUc -3'
miRNA:   3'- -CUGUUCGACCu--UCGGCuGCGU-CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 200214 0.69 0.852369
Target:  5'- uACGAGCaGGGuuCUGAacaGCAGACCCc -3'
miRNA:   3'- cUGUUCGaCCUucGGCUg--CGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 81154 0.69 0.859201
Target:  5'- --gGAGCUGGGcGGCCGcacgaagcgguccACGUAGGCCa -3'
miRNA:   3'- cugUUCGACCU-UCGGC-------------UGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 252 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 235083 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 40190 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 37263 0.69 0.867334
Target:  5'- cGACGAGgaGGAAgacGCCGugGCcgccgAGcaGCCCu -3'
miRNA:   3'- -CUGUUCgaCCUU---CGGCugCG-----UC--UGGG- -5'
29946 5' -55.6 NC_006273.1 + 100830 0.69 0.867334
Target:  5'- cGGCGGGgUaGGguGCCaGACGUAGACUCu -3'
miRNA:   3'- -CUGUUCgA-CCuuCGG-CUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 962 0.69 0.874516
Target:  5'- gGGCGuGCUGGgcGCCGGCGcCGGuaacgggaguuACCUg -3'
miRNA:   3'- -CUGUuCGACCuuCGGCUGC-GUC-----------UGGG- -5'
29946 5' -55.6 NC_006273.1 + 216849 0.69 0.874516
Target:  5'- cGGCcGGCaugUGGucaaaAGGCCGgcaggcGCGCAGGCCCu -3'
miRNA:   3'- -CUGuUCG---ACC-----UUCGGC------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 99096 0.69 0.874516
Target:  5'- uGCGcGcCUGaGAGCCGauuaucggggcaGCGCAGACCCa -3'
miRNA:   3'- cUGUuC-GACcUUCGGC------------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 19490 0.69 0.881492
Target:  5'- cGACcAGaUGGGAGaCGACGgacCAGACCCg -3'
miRNA:   3'- -CUGuUCgACCUUCgGCUGC---GUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 167183 0.69 0.888256
Target:  5'- cGGCGGGCgcagcggccgcGGAGGCCGGCGUAaacagcgucagcGGCCg -3'
miRNA:   3'- -CUGUUCGa----------CCUUCGGCUGCGU------------CUGGg -5'
29946 5' -55.6 NC_006273.1 + 142330 0.69 0.888256
Target:  5'- cGugGAGCUgcgcgcGGAAagucaggacagcGCCGugGCAucgGGCCCg -3'
miRNA:   3'- -CugUUCGA------CCUU------------CGGCugCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163850 0.68 0.894804
Target:  5'- cGGC-AGC-GGccGCCGGCGaGGGCCCu -3'
miRNA:   3'- -CUGuUCGaCCuuCGGCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 133483 0.68 0.894804
Target:  5'- uGCAGGCgcGGAcGCUGGCGgCGG-CCCg -3'
miRNA:   3'- cUGUUCGa-CCUuCGGCUGC-GUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 105099 0.68 0.894804
Target:  5'- uACAuGCUcGAGGCCGGCGCGG-CUg -3'
miRNA:   3'- cUGUuCGAcCUUCGGCUGCGUCuGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.