miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 163850 0.68 0.894804
Target:  5'- cGGC-AGC-GGccGCCGGCGaGGGCCCu -3'
miRNA:   3'- -CUGuUCGaCCuuCGGCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 68276 0.68 0.901134
Target:  5'- aGAUcAGC---AGGCCGACGCGG-CCCg -3'
miRNA:   3'- -CUGuUCGaccUUCGGCUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 193639 0.68 0.901134
Target:  5'- aGCGAGuCUGGgcGUCGAUGgAGugCUg -3'
miRNA:   3'- cUGUUC-GACCuuCGGCUGCgUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 196896 0.68 0.901134
Target:  5'- cGGCGAGCggcacGGAGacggaggccGCCGGCGgGGACgCg -3'
miRNA:   3'- -CUGUUCGa----CCUU---------CGGCUGCgUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 31750 0.68 0.901134
Target:  5'- ---cGGCUGGucgGGCCGuCGCGGACg- -3'
miRNA:   3'- cuguUCGACCu--UCGGCuGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 177247 0.68 0.901134
Target:  5'- cGugGuGC-GGAGGCCGcuGCGCGuGCCCg -3'
miRNA:   3'- -CugUuCGaCCUUCGGC--UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 2003 0.68 0.901134
Target:  5'- cGGCGAGCggcacGGAGacggaggccGCCGGCGgGGACgCg -3'
miRNA:   3'- -CUGUUCGa----CCUU---------CGGCUGCgUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 141052 0.68 0.901134
Target:  5'- gGACGGGCccgcGGAcGGaCCGGCGCcGGGCCUc -3'
miRNA:   3'- -CUGUUCGa---CCU-UC-GGCUGCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 30660 0.68 0.901134
Target:  5'- cGACGcGCcGGGcggcuuccugcGGCCGGcCGCGGugCCg -3'
miRNA:   3'- -CUGUuCGaCCU-----------UCGGCU-GCGUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 52526 0.68 0.907241
Target:  5'- aGACu-GCUGGggGCCGuugugcUGCAGcaGCCg -3'
miRNA:   3'- -CUGuuCGACCuuCGGCu-----GCGUC--UGGg -5'
29946 5' -55.6 NC_006273.1 + 86701 0.68 0.907241
Target:  5'- aGGCGAcGgaGGAgcuccagcAGCUGcGCGCAGACCUc -3'
miRNA:   3'- -CUGUU-CgaCCU--------UCGGC-UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 83644 0.68 0.909621
Target:  5'- ----uGUUGGAGGCCgugcgcaaggcgcgcGACGCGGcGCCCu -3'
miRNA:   3'- cuguuCGACCUUCGG---------------CUGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 73674 0.68 0.911965
Target:  5'- cGCGAGCgcaacgcucgucGGAGGCCGugGagcgAGugCCg -3'
miRNA:   3'- cUGUUCGa-----------CCUUCGGCugCg---UCugGG- -5'
29946 5' -55.6 NC_006273.1 + 230493 0.68 0.913124
Target:  5'- cGGCcGGCUGGucGGUCGGCGCucGGACg- -3'
miRNA:   3'- -CUGuUCGACCu-UCGGCUGCG--UCUGgg -5'
29946 5' -55.6 NC_006273.1 + 85109 0.68 0.913124
Target:  5'- -uUAAGCguuGAGCCGGaaaaacCGCAGGCCCu -3'
miRNA:   3'- cuGUUCGaccUUCGGCU------GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 233541 0.68 0.913124
Target:  5'- cGCGGGgUGcGgcGCCGACGCGaacGGCUCg -3'
miRNA:   3'- cUGUUCgAC-CuuCGGCUGCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 89442 0.68 0.913124
Target:  5'- aGCAgcGGCUGGAAGgccaCGGCGUagggauucAGAUCCa -3'
miRNA:   3'- cUGU--UCGACCUUCg---GCUGCG--------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 38649 0.68 0.913124
Target:  5'- cGCGGGgUGcGgcGCCGACGCGaacGGCUCg -3'
miRNA:   3'- cUGUUCgAC-CuuCGGCUGCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 104325 0.68 0.91878
Target:  5'- cGAUGAGCgccgagagggGGAugGGCUGGCGCGcGGCCa -3'
miRNA:   3'- -CUGUUCGa---------CCU--UCGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 133842 0.68 0.91878
Target:  5'- aGACGAGCucuUGcGAGGCUuuGAUGUAG-CCCg -3'
miRNA:   3'- -CUGUUCG---AC-CUUCGG--CUGCGUCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.