Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29946 | 5' | -55.6 | NC_006273.1 | + | 196478 | 0.66 | 0.962924 |
Target: 5'- gGACGAG-UGGuuucGGCaCGGCGCGGGCg- -3' miRNA: 3'- -CUGUUCgACCu---UCG-GCUGCGUCUGgg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 172110 | 0.66 | 0.962924 |
Target: 5'- aGCAGGgaGGcguAGuuGACGCGG-CCUu -3' miRNA: 3'- cUGUUCgaCCu--UCggCUGCGUCuGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 163021 | 0.66 | 0.962924 |
Target: 5'- gGACAcGC-GGgcGCCGGacaGCAGGCgCa -3' miRNA: 3'- -CUGUuCGaCCuuCGGCUg--CGUCUGgG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 83339 | 0.66 | 0.962924 |
Target: 5'- cGGCGuGgUGGGAcccggcggcGCCGugGUgggaGGACCCg -3' miRNA: 3'- -CUGUuCgACCUU---------CGGCugCG----UCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 172582 | 0.66 | 0.962924 |
Target: 5'- uGGCcGGCUGGAucagcGCCauuuguGCGUAGGCCg -3' miRNA: 3'- -CUGuUCGACCUu----CGGc-----UGCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 118961 | 0.66 | 0.962924 |
Target: 5'- aGCGGGCgagaAAGCCGcccACGUAGACCg -3' miRNA: 3'- cUGUUCGacc-UUCGGC---UGCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 161000 | 0.66 | 0.9595 |
Target: 5'- aGCGAGCUGcGcgucaCCGACGCcGGCCUu -3' miRNA: 3'- cUGUUCGAC-Cuuc--GGCUGCGuCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 35800 | 0.66 | 0.9595 |
Target: 5'- uACAAGC-GGccAGCCuGGCGCAGGCa- -3' miRNA: 3'- cUGUUCGaCCu-UCGG-CUGCGUCUGgg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 206413 | 0.66 | 0.955863 |
Target: 5'- cGACc-GCUGGAGGCCuccuaaGACGUcgcGACCg -3' miRNA: 3'- -CUGuuCGACCUUCGG------CUGCGu--CUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 29297 | 0.66 | 0.955863 |
Target: 5'- aGAC--GCUGGAGGgCuACGCGGAUCg -3' miRNA: 3'- -CUGuuCGACCUUCgGcUGCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 104481 | 0.66 | 0.955863 |
Target: 5'- uGACcAGCaGGggGaaGACGCAGuggUCCg -3' miRNA: 3'- -CUGuUCGaCCuuCggCUGCGUCu--GGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 103566 | 0.66 | 0.955863 |
Target: 5'- uGCGGGCUGGucGCCGAguggGgGGAUUCg -3' miRNA: 3'- cUGUUCGACCuuCGGCUg---CgUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 66823 | 0.66 | 0.955863 |
Target: 5'- aGCucAGCUGGAAGCgcuaggCGGCcuGCAGcuACCCg -3' miRNA: 3'- cUGu-UCGACCUUCG------GCUG--CGUC--UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 32680 | 0.66 | 0.955863 |
Target: 5'- -cCGAGC-GGuuGCCguGACGCAGucuGCCCu -3' miRNA: 3'- cuGUUCGaCCuuCGG--CUGCGUC---UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 87881 | 0.66 | 0.952011 |
Target: 5'- aGCGAGCgGGccGCCGcuauCGCcauGGCCCc -3' miRNA: 3'- cUGUUCGaCCuuCGGCu---GCGu--CUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 115693 | 0.66 | 0.952011 |
Target: 5'- aGACGccCUGGAgcAGCUGGCcuguuCGGACCCu -3' miRNA: 3'- -CUGUucGACCU--UCGGCUGc----GUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 36287 | 0.66 | 0.952011 |
Target: 5'- aGCGAGCUGcgguccacGggGCCGAUGCu--CUCg -3' miRNA: 3'- cUGUUCGAC--------CuuCGGCUGCGucuGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 202461 | 0.66 | 0.952011 |
Target: 5'- cGACGuagaauaCUGGAAGCUGcuggUGguGACCCa -3' miRNA: 3'- -CUGUuc-----GACCUUCGGCu---GCguCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 136025 | 0.66 | 0.952011 |
Target: 5'- aGACAGcGCU---GGCCGAucCGCGGGCCg -3' miRNA: 3'- -CUGUU-CGAccuUCGGCU--GCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 192802 | 0.67 | 0.947939 |
Target: 5'- uGCAAGCUGcuggucaaGGAGCUG-CGCAuGugCCu -3' miRNA: 3'- cUGUUCGAC--------CUUCGGCuGCGU-CugGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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