miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 121890 0.67 0.947939
Target:  5'- cGACAugggcucuuGGCUGG-GGCaGAUGCuucGGCCCg -3'
miRNA:   3'- -CUGU---------UCGACCuUCGgCUGCGu--CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 62326 0.67 0.947939
Target:  5'- aACAAGUUGGggGgUGcACuGCAGGCUa -3'
miRNA:   3'- cUGUUCGACCuuCgGC-UG-CGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 4832 0.67 0.947939
Target:  5'- aACGAGUccGGAGCC-AUGCGGACCa -3'
miRNA:   3'- cUGUUCGacCUUCGGcUGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 62160 0.67 0.947939
Target:  5'- cACGcAGCUGGAaacGGCUgccacggaGGCGCGG-CCCu -3'
miRNA:   3'- cUGU-UCGACCU---UCGG--------CUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 100641 0.67 0.947939
Target:  5'- uGCAAGUUGGGAGCguuguauaCGGCGaAGAUCUu -3'
miRNA:   3'- cUGUUCGACCUUCG--------GCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 30169 0.67 0.947939
Target:  5'- gGGCGAGCccGGggGcCCGuCGCAcACCa -3'
miRNA:   3'- -CUGUUCGa-CCuuC-GGCuGCGUcUGGg -5'
29946 5' -55.6 NC_006273.1 + 168409 0.67 0.94752
Target:  5'- aGCAAGCaGuguucguguuccuGAAGCagcACGCGGACCCg -3'
miRNA:   3'- cUGUUCGaC-------------CUUCGgc-UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 123256 0.67 0.943645
Target:  5'- aGGCGcgccgaaauacGGCUGGuGAGUCcACGCGGcCCCg -3'
miRNA:   3'- -CUGU-----------UCGACC-UUCGGcUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 141793 0.67 0.943645
Target:  5'- -uCAAGCcgcGGuacAGGCCG-CGCAGGCCg -3'
miRNA:   3'- cuGUUCGa--CC---UUCGGCuGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 46469 0.67 0.943645
Target:  5'- ---cGGCUGGAcaccGCCgguGACGCccAGGCCCu -3'
miRNA:   3'- cuguUCGACCUu---CGG---CUGCG--UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 105281 0.67 0.943645
Target:  5'- uGCAGGCUgaGGucGCgCGGCagGCAGGCCa -3'
miRNA:   3'- cUGUUCGA--CCuuCG-GCUG--CGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 205123 0.67 0.939127
Target:  5'- --gGAGgaGGGaucgGGUgaUGACGCAGGCCCc -3'
miRNA:   3'- cugUUCgaCCU----UCG--GCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 149559 0.67 0.939127
Target:  5'- cGGCGguGGUagUGGcguGGgCGACGCGGACCa -3'
miRNA:   3'- -CUGU--UCG--ACCu--UCgGCUGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 22000 0.67 0.939127
Target:  5'- aGAuCGGGCUGcuGGCCGcgggauCGguGGCCCu -3'
miRNA:   3'- -CU-GUUCGACcuUCGGCu-----GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 38139 0.67 0.939127
Target:  5'- -uCGGGCcgGcGAGGCCGACGCGGuuuauauacACCg -3'
miRNA:   3'- cuGUUCGa-C-CUUCGGCUGCGUC---------UGGg -5'
29946 5' -55.6 NC_006273.1 + 125125 0.67 0.939127
Target:  5'- cGACAAGaa-GAGGCCGGCGCccaAGucuccguCCCa -3'
miRNA:   3'- -CUGUUCgacCUUCGGCUGCG---UCu------GGG- -5'
29946 5' -55.6 NC_006273.1 + 22284 0.67 0.939127
Target:  5'- cACGcGCUGGuGGCCGAacaGCAG-CUCu -3'
miRNA:   3'- cUGUuCGACCuUCGGCUg--CGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 112233 0.67 0.937727
Target:  5'- uGGCAAuGCgcggcGGggGCUGGCGCgaggacgugcucauGGACCg -3'
miRNA:   3'- -CUGUU-CGa----CCuuCGGCUGCG--------------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 79044 0.67 0.936307
Target:  5'- -cCAGGCUGGGcccacgcgccaccagAGCCugcGGCGuCAGGCCa -3'
miRNA:   3'- cuGUUCGACCU---------------UCGG---CUGC-GUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 75449 0.67 0.936307
Target:  5'- cACuAGCUGcggcGGAGCCGucgccggcaguagcaACGCAGgACCCg -3'
miRNA:   3'- cUGuUCGAC----CUUCGGC---------------UGCGUC-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.