miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 196810 0.67 0.934382
Target:  5'- cGGCuGGCUGGc-GCUgGGCGCGGugcuGCCCg -3'
miRNA:   3'- -CUGuUCGACCuuCGG-CUGCGUC----UGGG- -5'
29946 5' -55.6 NC_006273.1 + 216029 0.67 0.934382
Target:  5'- cGACGGGUaGGGAGCCuGGgaguccauCGCuucAGGCCCa -3'
miRNA:   3'- -CUGUUCGaCCUUCGG-CU--------GCG---UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 1918 0.67 0.934382
Target:  5'- cGGCuGGCUGGc-GCUgGGCGCGGugcuGCCCg -3'
miRNA:   3'- -CUGuUCGACCuuCGG-CUGCGUC----UGGG- -5'
29946 5' -55.6 NC_006273.1 + 147567 0.67 0.931426
Target:  5'- cGCGGGUcguuaaauacuacgaUGGGAGCCGcCGCGG-CUCa -3'
miRNA:   3'- cUGUUCG---------------ACCUUCGGCuGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 1730 0.67 0.92941
Target:  5'- gGACGggAGCUGc--GCCGGCGguGGgCCg -3'
miRNA:   3'- -CUGU--UCGACcuuCGGCUGCguCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 34663 0.67 0.92941
Target:  5'- aGACcgGAGCggugaGcGGAGCCGAgcaGCGGACCUu -3'
miRNA:   3'- -CUG--UUCGa----C-CUUCGGCUg--CGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 18120 0.67 0.92941
Target:  5'- uGACAccCUGGAAGCCGuCGguGuACUa -3'
miRNA:   3'- -CUGUucGACCUUCGGCuGCguC-UGGg -5'
29946 5' -55.6 NC_006273.1 + 218195 0.67 0.92941
Target:  5'- uGGCAugGGC-GGcGGCCGACGgCGGACgaCCg -3'
miRNA:   3'- -CUGU--UCGaCCuUCGGCUGC-GUCUG--GG- -5'
29946 5' -55.6 NC_006273.1 + 196622 0.67 0.92941
Target:  5'- gGACGggAGCUGc--GCCGGCGguGGgCCg -3'
miRNA:   3'- -CUGU--UCGACcuuCGGCUGCguCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 102330 0.67 0.92941
Target:  5'- cGGCGGGUggugGuGAAGCagguuACGCAGAUCCa -3'
miRNA:   3'- -CUGUUCGa---C-CUUCGgc---UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 179736 0.67 0.9289
Target:  5'- cGACAcgcagcccagccuAGCUcGGugaaGGGUCGACGCAcACCCg -3'
miRNA:   3'- -CUGU-------------UCGA-CC----UUCGGCUGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 211053 0.67 0.9289
Target:  5'- ----cGCUGGGucGCgGugggaaaGCGCAGACCCa -3'
miRNA:   3'- cuguuCGACCUu-CGgC-------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 110933 0.67 0.924209
Target:  5'- cGCGAGCgcagcgucGGcGAGCCG-CGCAcGCCCg -3'
miRNA:   3'- cUGUUCGa-------CC-UUCGGCuGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 57025 0.67 0.924209
Target:  5'- gGACGAGgaGGAGGa-GGCGUccgcGGCCCg -3'
miRNA:   3'- -CUGUUCgaCCUUCggCUGCGu---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 133842 0.68 0.91878
Target:  5'- aGACGAGCucuUGcGAGGCUuuGAUGUAG-CCCg -3'
miRNA:   3'- -CUGUUCG---AC-CUUCGG--CUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 104325 0.68 0.91878
Target:  5'- cGAUGAGCgccgagagggGGAugGGCUGGCGCGcGGCCa -3'
miRNA:   3'- -CUGUUCGa---------CCU--UCGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 8246 0.68 0.91878
Target:  5'- gGACGGGgUGGGacgagAGCCGguagggcagcgGCGCAuACCCa -3'
miRNA:   3'- -CUGUUCgACCU-----UCGGC-----------UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163426 0.68 0.91878
Target:  5'- cGCGugGGCUGGaAAGCCG-UGCuGGGCCUc -3'
miRNA:   3'- cUGU--UCGACC-UUCGGCuGCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 47475 0.68 0.91878
Target:  5'- gGACGaagAGCaGGAgaacgacggcgAGCCG-CGCgAGGCCCa -3'
miRNA:   3'- -CUGU---UCGaCCU-----------UCGGCuGCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 144755 0.68 0.91878
Target:  5'- aACGuGCUgcGGAGGCaCGACGCGGcgGCCg -3'
miRNA:   3'- cUGUuCGA--CCUUCG-GCUGCGUC--UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.