miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 252 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 962 0.69 0.874516
Target:  5'- gGGCGuGCUGGgcGCCGGCGcCGGuaacgggaguuACCUg -3'
miRNA:   3'- -CUGUuCGACCuuCGGCUGC-GUC-----------UGGG- -5'
29946 5' -55.6 NC_006273.1 + 1585 0.66 0.962924
Target:  5'- gGACGAG-UGGuuucGGCaCGGCGCGGGCg- -3'
miRNA:   3'- -CUGUUCgACCu---UCG-GCUGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 1730 0.67 0.92941
Target:  5'- gGACGggAGCUGc--GCCGGCGguGGgCCg -3'
miRNA:   3'- -CUGU--UCGACcuuCGGCUGCguCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 1918 0.67 0.934382
Target:  5'- cGGCuGGCUGGc-GCUgGGCGCGGugcuGCCCg -3'
miRNA:   3'- -CUGuUCGACCuuCGG-CUGCGUC----UGGG- -5'
29946 5' -55.6 NC_006273.1 + 2003 0.68 0.901134
Target:  5'- cGGCGAGCggcacGGAGacggaggccGCCGGCGgGGACgCg -3'
miRNA:   3'- -CUGUUCGa----CCUU---------CGGCUGCgUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 2283 0.71 0.785437
Target:  5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3'
miRNA:   3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 2370 0.66 0.966142
Target:  5'- gGGCGuGCUGGGcgcGCUGGCGCugGGGCgCg -3'
miRNA:   3'- -CUGUuCGACCUu--CGGCUGCG--UCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 3672 0.72 0.729512
Target:  5'- cGAUcAGC-GGcauGCCGACGCcGACCCg -3'
miRNA:   3'- -CUGuUCGaCCuu-CGGCUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 4832 0.67 0.947939
Target:  5'- aACGAGUccGGAGCC-AUGCGGACCa -3'
miRNA:   3'- cUGUUCGacCUUCGGcUGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 5617 0.71 0.757019
Target:  5'- cGGCAAGUugcgcggUGGggGCgUGcccCGCAGACCCc -3'
miRNA:   3'- -CUGUUCG-------ACCuuCG-GCu--GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 8246 0.68 0.91878
Target:  5'- gGACGGGgUGGGacgagAGCCGguagggcagcgGCGCAuACCCa -3'
miRNA:   3'- -CUGUUCgACCU-----UCGGC-----------UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 18120 0.67 0.92941
Target:  5'- uGACAccCUGGAAGCCGuCGguGuACUa -3'
miRNA:   3'- -CUGUucGACCUUCGGCuGCguC-UGGg -5'
29946 5' -55.6 NC_006273.1 + 19490 0.69 0.881492
Target:  5'- cGACcAGaUGGGAGaCGACGgacCAGACCCg -3'
miRNA:   3'- -CUGuUCgACCUUCgGCUGC---GUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 21666 0.73 0.700348
Target:  5'- cACGGcGCUGGuGGCCGACGUgcacGACCUg -3'
miRNA:   3'- cUGUU-CGACCuUCGGCUGCGu---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 22000 0.67 0.939127
Target:  5'- aGAuCGGGCUGcuGGCCGcgggauCGguGGCCCu -3'
miRNA:   3'- -CU-GUUCGACcuUCGGCu-----GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 22284 0.67 0.939127
Target:  5'- cACGcGCUGGuGGCCGAacaGCAG-CUCu -3'
miRNA:   3'- cUGUuCGACCuUCGGCUg--CGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 28323 0.71 0.794347
Target:  5'- uACuGGCUGGAAcGUCaGCGCcGACCCg -3'
miRNA:   3'- cUGuUCGACCUU-CGGcUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 29297 0.66 0.955863
Target:  5'- aGAC--GCUGGAGGgCuACGCGGAUCg -3'
miRNA:   3'- -CUGuuCGACCUUCgGcUGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 29812 0.68 0.894804
Target:  5'- uGguGGCUGGGAGUgGugGCGGcaGCCa -3'
miRNA:   3'- cUguUCGACCUUCGgCugCGUC--UGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.