miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 30169 0.67 0.947939
Target:  5'- gGGCGAGCccGGggGcCCGuCGCAcACCa -3'
miRNA:   3'- -CUGUUCGa-CCuuC-GGCuGCGUcUGGg -5'
29946 5' -55.6 NC_006273.1 + 30660 0.68 0.901134
Target:  5'- cGACGcGCcGGGcggcuuccugcGGCCGGcCGCGGugCCg -3'
miRNA:   3'- -CUGUuCGaCCU-----------UCGGCU-GCGUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 31750 0.68 0.901134
Target:  5'- ---cGGCUGGucgGGCCGuCGCGGACg- -3'
miRNA:   3'- cuguUCGACCu--UCGGCuGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 32680 0.66 0.955863
Target:  5'- -cCGAGC-GGuuGCCguGACGCAGucuGCCCu -3'
miRNA:   3'- cuGUUCGaCCuuCGG--CUGCGUC---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 34663 0.67 0.92941
Target:  5'- aGACcgGAGCggugaGcGGAGCCGAgcaGCGGACCUu -3'
miRNA:   3'- -CUG--UUCGa----C-CUUCGGCUg--CGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 35456 0.66 0.966142
Target:  5'- uACAAGCgGGcGAGCCGcccAgGCGGAUCUu -3'
miRNA:   3'- cUGUUCGaCC-UUCGGC---UgCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 35800 0.66 0.9595
Target:  5'- uACAAGC-GGccAGCCuGGCGCAGGCa- -3'
miRNA:   3'- cUGUUCGaCCu-UCGG-CUGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 36287 0.66 0.952011
Target:  5'- aGCGAGCUGcgguccacGggGCCGAUGCu--CUCg -3'
miRNA:   3'- cUGUUCGAC--------CuuCGGCUGCGucuGGG- -5'
29946 5' -55.6 NC_006273.1 + 36842 0.7 0.820206
Target:  5'- aGACuGGCagGGAcacgcgcuacguAGCCGGuCGCGGACCg -3'
miRNA:   3'- -CUGuUCGa-CCU------------UCGGCU-GCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 37139 0.74 0.630764
Target:  5'- gGAgGuGCUGGcGGCCGugGCcuguGGCCCg -3'
miRNA:   3'- -CUgUuCGACCuUCGGCugCGu---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 37263 0.69 0.867334
Target:  5'- cGACGAGgaGGAAgacGCCGugGCcgccgAGcaGCCCu -3'
miRNA:   3'- -CUGUUCgaCCUU---CGGCugCG-----UC--UGGG- -5'
29946 5' -55.6 NC_006273.1 + 38139 0.67 0.939127
Target:  5'- -uCGGGCcgGcGAGGCCGACGCGGuuuauauacACCg -3'
miRNA:   3'- cuGUUCGa-C-CUUCGGCUGCGUC---------UGGg -5'
29946 5' -55.6 NC_006273.1 + 38605 0.71 0.776396
Target:  5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3'
miRNA:   3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 38649 0.68 0.913124
Target:  5'- cGCGGGgUGcGgcGCCGACGCGaacGGCUCg -3'
miRNA:   3'- cUGUUCgAC-CuuCGGCUGCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 40190 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 41719 1.12 0.002882
Target:  5'- aGACAAGCUGGAAGCCGACGCAGACCCa -3'
miRNA:   3'- -CUGUUCGACCUUCGGCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 46469 0.67 0.943645
Target:  5'- ---cGGCUGGAcaccGCCgguGACGCccAGGCCCu -3'
miRNA:   3'- cuguUCGACCUu---CGG---CUGCG--UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 47475 0.68 0.91878
Target:  5'- gGACGaagAGCaGGAgaacgacggcgAGCCG-CGCgAGGCCCa -3'
miRNA:   3'- -CUGU---UCGaCCU-----------UCGGCuGCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 47799 0.7 0.828509
Target:  5'- uGCGAGCUGuacggggaauacGAGcGCCGGuuCGCGGACCUg -3'
miRNA:   3'- cUGUUCGAC------------CUU-CGGCU--GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 52526 0.68 0.907241
Target:  5'- aGACu-GCUGGggGCCGuugugcUGCAGcaGCCg -3'
miRNA:   3'- -CUGuuCGACCuuCGGCu-----GCGUC--UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.