miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 57025 0.67 0.924209
Target:  5'- gGACGAGgaGGAGGa-GGCGUccgcGGCCCg -3'
miRNA:   3'- -CUGUUCgaCCUUCggCUGCGu---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 61979 0.7 0.836642
Target:  5'- uGAC-GGCUuuccaGAAGCUGuuGCAGACCCu -3'
miRNA:   3'- -CUGuUCGAc----CUUCGGCugCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 62160 0.67 0.947939
Target:  5'- cACGcAGCUGGAaacGGCUgccacggaGGCGCGG-CCCu -3'
miRNA:   3'- cUGU-UCGACCU---UCGG--------CUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 62326 0.67 0.947939
Target:  5'- aACAAGUUGGggGgUGcACuGCAGGCUa -3'
miRNA:   3'- cUGUUCGACCuuCgGC-UG-CGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 66823 0.66 0.955863
Target:  5'- aGCucAGCUGGAAGCgcuaggCGGCcuGCAGcuACCCg -3'
miRNA:   3'- cUGu-UCGACCUUCG------GCUG--CGUC--UGGG- -5'
29946 5' -55.6 NC_006273.1 + 68276 0.68 0.901134
Target:  5'- aGAUcAGC---AGGCCGACGCGG-CCCg -3'
miRNA:   3'- -CUGuUCGaccUUCGGCUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 68363 0.71 0.794347
Target:  5'- cGACGAGCaGcuGAGCaCGGCGCAGaACCUg -3'
miRNA:   3'- -CUGUUCGaCc-UUCG-GCUGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 70834 0.71 0.785437
Target:  5'- cGGCAcGCUGGcGGGCCGAcCGCcgcGCCCu -3'
miRNA:   3'- -CUGUuCGACC-UUCGGCU-GCGuc-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 73244 0.66 0.969158
Target:  5'- aGAgGGGC-GcGAAGagaCGGCGCAGAgCCu -3'
miRNA:   3'- -CUgUUCGaC-CUUCg--GCUGCGUCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 73544 0.72 0.71889
Target:  5'- cGACGAcucacguGCUccuccaGAGGCCGACGCgcGGACCCu -3'
miRNA:   3'- -CUGUU-------CGAc-----CUUCGGCUGCG--UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 73674 0.68 0.911965
Target:  5'- cGCGAGCgcaacgcucgucGGAGGCCGugGagcgAGugCCg -3'
miRNA:   3'- cUGUUCGa-----------CCUUCGGCugCg---UCugGG- -5'
29946 5' -55.6 NC_006273.1 + 75449 0.67 0.936307
Target:  5'- cACuAGCUGcggcGGAGCCGucgccggcaguagcaACGCAGgACCCg -3'
miRNA:   3'- cUGuUCGAC----CUUCGGC---------------UGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 79044 0.67 0.936307
Target:  5'- -cCAGGCUGGGcccacgcgccaccagAGCCugcGGCGuCAGGCCa -3'
miRNA:   3'- cuGUUCGACCU---------------UCGG---CUGC-GUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 81154 0.69 0.859201
Target:  5'- --gGAGCUGGGcGGCCGcacgaagcgguccACGUAGGCCa -3'
miRNA:   3'- cugUUCGACCU-UCGGC-------------UGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 81762 0.7 0.81174
Target:  5'- -cCGGGCUGcGAAcGCUGACGCcGGCCa -3'
miRNA:   3'- cuGUUCGAC-CUU-CGGCUGCGuCUGGg -5'
29946 5' -55.6 NC_006273.1 + 83339 0.66 0.962924
Target:  5'- cGGCGuGgUGGGAcccggcggcGCCGugGUgggaGGACCCg -3'
miRNA:   3'- -CUGUuCgACCUU---------CGGCugCG----UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 83644 0.68 0.909621
Target:  5'- ----uGUUGGAGGCCgugcgcaaggcgcgcGACGCGGcGCCCu -3'
miRNA:   3'- cuguuCGACCUUCGG---------------CUGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 85109 0.68 0.913124
Target:  5'- -uUAAGCguuGAGCCGGaaaaacCGCAGGCCCu -3'
miRNA:   3'- cuGUUCGaccUUCGGCU------GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 86701 0.68 0.907241
Target:  5'- aGGCGAcGgaGGAgcuccagcAGCUGcGCGCAGACCUc -3'
miRNA:   3'- -CUGUU-CgaCCU--------UCGGC-UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 87881 0.66 0.952011
Target:  5'- aGCGAGCgGGccGCCGcuauCGCcauGGCCCc -3'
miRNA:   3'- cUGUUCGaCCuuCGGCu---GCGu--CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.