miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 89442 0.68 0.913124
Target:  5'- aGCAgcGGCUGGAAGgccaCGGCGUagggauucAGAUCCa -3'
miRNA:   3'- cUGU--UCGACCUUCg---GCUGCG--------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 99096 0.69 0.874516
Target:  5'- uGCGcGcCUGaGAGCCGauuaucggggcaGCGCAGACCCa -3'
miRNA:   3'- cUGUuC-GACcUUCGGC------------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 100641 0.67 0.947939
Target:  5'- uGCAAGUUGGGAGCguuguauaCGGCGaAGAUCUu -3'
miRNA:   3'- cUGUUCGACCUUCG--------GCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 100830 0.69 0.867334
Target:  5'- cGGCGGGgUaGGguGCCaGACGUAGACUCu -3'
miRNA:   3'- -CUGUUCgA-CCuuCGG-CUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 102330 0.67 0.92941
Target:  5'- cGGCGGGUggugGuGAAGCagguuACGCAGAUCCa -3'
miRNA:   3'- -CUGUUCGa---C-CUUCGgc---UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 103566 0.66 0.955863
Target:  5'- uGCGGGCUGGucGCCGAguggGgGGAUUCg -3'
miRNA:   3'- cUGUUCGACCuuCGGCUg---CgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 104325 0.68 0.91878
Target:  5'- cGAUGAGCgccgagagggGGAugGGCUGGCGCGcGGCCa -3'
miRNA:   3'- -CUGUUCGa---------CCU--UCGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 104481 0.66 0.955863
Target:  5'- uGACcAGCaGGggGaaGACGCAGuggUCCg -3'
miRNA:   3'- -CUGuUCGaCCuuCggCUGCGUCu--GGG- -5'
29946 5' -55.6 NC_006273.1 + 105099 0.68 0.894804
Target:  5'- uACAuGCUcGAGGCCGGCGCGG-CUg -3'
miRNA:   3'- cUGUuCGAcCUUCGGCUGCGUCuGGg -5'
29946 5' -55.6 NC_006273.1 + 105281 0.67 0.943645
Target:  5'- uGCAGGCUgaGGucGCgCGGCagGCAGGCCa -3'
miRNA:   3'- cUGUUCGA--CCuuCG-GCUG--CGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 105662 0.66 0.969158
Target:  5'- gGACAGGCacGGuagaGAGCCGcaaaaacaGCGCGcACCCg -3'
miRNA:   3'- -CUGUUCGa-CC----UUCGGC--------UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 109306 0.71 0.794347
Target:  5'- cGACGAgguggaccGCUGGAuccggcacgcGGCCGGCGUAGAacggCCg -3'
miRNA:   3'- -CUGUU--------CGACCU----------UCGGCUGCGUCUg---GG- -5'
29946 5' -55.6 NC_006273.1 + 110933 0.67 0.924209
Target:  5'- cGCGAGCgcagcgucGGcGAGCCG-CGCAcGCCCg -3'
miRNA:   3'- cUGUUCGa-------CC-UUCGGCuGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 111383 0.75 0.54164
Target:  5'- gGACGAGCUGGAcaagcacagcGGCUcacCGCAGACCa -3'
miRNA:   3'- -CUGUUCGACCU----------UCGGcu-GCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 112233 0.67 0.937727
Target:  5'- uGGCAAuGCgcggcGGggGCUGGCGCgaggacgugcucauGGACCg -3'
miRNA:   3'- -CUGUU-CGa----CCuuCGGCUGCG--------------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 113334 0.71 0.785437
Target:  5'- cGGCAAGCUGGGucgCGACGU--GCCCg -3'
miRNA:   3'- -CUGUUCGACCUucgGCUGCGucUGGG- -5'
29946 5' -55.6 NC_006273.1 + 113484 0.72 0.729512
Target:  5'- cGACcuGCUGGGuucggaugccguAGCCGGCGgCGGguuGCCCg -3'
miRNA:   3'- -CUGuuCGACCU------------UCGGCUGC-GUC---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 115198 0.76 0.512766
Target:  5'- cGGCucGCUGGAAGCCGGuCGUcugcgacuccuGGACCUg -3'
miRNA:   3'- -CUGuuCGACCUUCGGCU-GCG-----------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 115693 0.66 0.952011
Target:  5'- aGACGccCUGGAgcAGCUGGCcuguuCGGACCCu -3'
miRNA:   3'- -CUGUucGACCU--UCGGCUGc----GUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 116694 0.71 0.794347
Target:  5'- -cCGAGCUGGuu-UCG-CGCGGGCCCg -3'
miRNA:   3'- cuGUUCGACCuucGGCuGCGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.