miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 235083 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 233541 0.68 0.913124
Target:  5'- cGCGGGgUGcGgcGCCGACGCGaacGGCUCg -3'
miRNA:   3'- cUGUUCgAC-CuuCGGCUGCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 233498 0.71 0.776396
Target:  5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3'
miRNA:   3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 230493 0.68 0.913124
Target:  5'- cGGCcGGCUGGucGGUCGGCGCucGGACg- -3'
miRNA:   3'- -CUGuUCGACCu-UCGGCUGCG--UCUGgg -5'
29946 5' -55.6 NC_006273.1 + 218799 0.66 0.966142
Target:  5'- -cCAAGCgGGcGGCUGGCGCuaccucgaaGGGCCa -3'
miRNA:   3'- cuGUUCGaCCuUCGGCUGCG---------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 218195 0.67 0.92941
Target:  5'- uGGCAugGGC-GGcGGCCGACGgCGGACgaCCg -3'
miRNA:   3'- -CUGU--UCGaCCuUCGGCUGC-GUCUG--GG- -5'
29946 5' -55.6 NC_006273.1 + 216849 0.69 0.874516
Target:  5'- cGGCcGGCaugUGGucaaaAGGCCGgcaggcGCGCAGGCCCu -3'
miRNA:   3'- -CUGuUCG---ACC-----UUCGGC------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 216691 0.8 0.326579
Target:  5'- uGCAGGCaucgUGGAGGCUGAUGUAGACaCCa -3'
miRNA:   3'- cUGUUCG----ACCUUCGGCUGCGUCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 216029 0.67 0.934382
Target:  5'- cGACGGGUaGGGAGCCuGGgaguccauCGCuucAGGCCCa -3'
miRNA:   3'- -CUGUUCGaCCUUCGG-CU--------GCG---UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 213952 0.71 0.803117
Target:  5'- -gUAAGCUGGAAGgCGACGaGGACg- -3'
miRNA:   3'- cuGUUCGACCUUCgGCUGCgUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 211282 0.66 0.969158
Target:  5'- -cCGAaaUGGAGGCCGcguUGguGGCCCc -3'
miRNA:   3'- cuGUUcgACCUUCGGCu--GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 211053 0.67 0.9289
Target:  5'- ----cGCUGGGucGCgGugggaaaGCGCAGACCCa -3'
miRNA:   3'- cuguuCGACCUu-CGgC-------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 210383 0.71 0.785437
Target:  5'- gGACcuGCUGcGAaaaguGGCCGGCGaagauaAGGCCCa -3'
miRNA:   3'- -CUGuuCGAC-CU-----UCGGCUGCg-----UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 206413 0.66 0.955863
Target:  5'- cGACc-GCUGGAGGCCuccuaaGACGUcgcGACCg -3'
miRNA:   3'- -CUGuuCGACCUUCGG------CUGCGu--CUGGg -5'
29946 5' -55.6 NC_006273.1 + 205123 0.67 0.939127
Target:  5'- --gGAGgaGGGaucgGGUgaUGACGCAGGCCCc -3'
miRNA:   3'- cugUUCgaCCU----UCG--GCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 202461 0.66 0.952011
Target:  5'- cGACGuagaauaCUGGAAGCUGcuggUGguGACCCa -3'
miRNA:   3'- -CUGUuc-----GACCUUCGGCu---GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 200214 0.69 0.852369
Target:  5'- uACGAGCaGGGuuCUGAacaGCAGACCCc -3'
miRNA:   3'- cUGUUCGaCCUucGGCUg--CGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 199011 0.69 0.852369
Target:  5'- gGAUAAGUUGGugcGGCUGuCGCGcGACCUc -3'
miRNA:   3'- -CUGUUCGACCu--UCGGCuGCGU-CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 197263 0.66 0.966142
Target:  5'- gGGCGuGCUGGGcgcGCUGGCGCugGGGCgCg -3'
miRNA:   3'- -CUGUuCGACCUu--CGGCUGCG--UCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 197193 0.66 0.966142
Target:  5'- gGAUGAGC-GGccG-CGGCGCGGGCUCg -3'
miRNA:   3'- -CUGUUCGaCCuuCgGCUGCGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.