miRNA display CGI


Results 21 - 40 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 197176 0.71 0.785437
Target:  5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3'
miRNA:   3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 196896 0.68 0.901134
Target:  5'- cGGCGAGCggcacGGAGacggaggccGCCGGCGgGGACgCg -3'
miRNA:   3'- -CUGUUCGa----CCUU---------CGGCUGCgUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 196810 0.67 0.934382
Target:  5'- cGGCuGGCUGGc-GCUgGGCGCGGugcuGCCCg -3'
miRNA:   3'- -CUGuUCGACCuuCGG-CUGCGUC----UGGG- -5'
29946 5' -55.6 NC_006273.1 + 196622 0.67 0.92941
Target:  5'- gGACGggAGCUGc--GCCGGCGguGGgCCg -3'
miRNA:   3'- -CUGU--UCGACcuuCGGCUGCguCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 196478 0.66 0.962924
Target:  5'- gGACGAG-UGGuuucGGCaCGGCGCGGGCg- -3'
miRNA:   3'- -CUGUUCgACCu---UCG-GCUGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 194247 0.66 0.969158
Target:  5'- aGCGAGgaGGAAGaCGACGacuccuCGGACaCCg -3'
miRNA:   3'- cUGUUCgaCCUUCgGCUGC------GUCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 193639 0.68 0.901134
Target:  5'- aGCGAGuCUGGgcGUCGAUGgAGugCUg -3'
miRNA:   3'- cUGUUC-GACCuuCGGCUGCgUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 192802 0.67 0.947939
Target:  5'- uGCAAGCUGcuggucaaGGAGCUG-CGCAuGugCCu -3'
miRNA:   3'- cUGUUCGAC--------CUUCGGCuGCGU-CugGG- -5'
29946 5' -55.6 NC_006273.1 + 191468 0.66 0.966142
Target:  5'- uGGCcugauGgUGGAAGUCGGCGCcgccgccgcuuGGACCUu -3'
miRNA:   3'- -CUGuu---CgACCUUCGGCUGCG-----------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 183022 0.66 0.966142
Target:  5'- aGCcuGCUGGAcgaGGCCGagugGCGaCAGACgCa -3'
miRNA:   3'- cUGuuCGACCU---UCGGC----UGC-GUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 179736 0.67 0.9289
Target:  5'- cGACAcgcagcccagccuAGCUcGGugaaGGGUCGACGCAcACCCg -3'
miRNA:   3'- -CUGU-------------UCGA-CC----UUCGGCUGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 177247 0.68 0.901134
Target:  5'- cGugGuGC-GGAGGCCGcuGCGCGuGCCCg -3'
miRNA:   3'- -CugUuCGaCCUUCGGC--UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 172582 0.66 0.962924
Target:  5'- uGGCcGGCUGGAucagcGCCauuuguGCGUAGGCCg -3'
miRNA:   3'- -CUGuUCGACCUu----CGGc-----UGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 172110 0.66 0.962924
Target:  5'- aGCAGGgaGGcguAGuuGACGCGG-CCUu -3'
miRNA:   3'- cUGUUCgaCCu--UCggCUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 169563 0.66 0.966142
Target:  5'- cGCcuGCUGcGccGCCGAUuGCGGACCg -3'
miRNA:   3'- cUGuuCGAC-CuuCGGCUG-CGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 168409 0.67 0.94752
Target:  5'- aGCAAGCaGuguucguguuccuGAAGCagcACGCGGACCCg -3'
miRNA:   3'- cUGUUCGaC-------------CUUCGgc-UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 168345 0.71 0.785437
Target:  5'- aAUGAGCUGGucGCCcuGAUGCAGAUgCa -3'
miRNA:   3'- cUGUUCGACCuuCGG--CUGCGUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 167183 0.69 0.888256
Target:  5'- cGGCGGGCgcagcggccgcGGAGGCCGGCGUAaacagcgucagcGGCCg -3'
miRNA:   3'- -CUGUUCGa----------CCUUCGGCUGCGU------------CUGGg -5'
29946 5' -55.6 NC_006273.1 + 167149 0.74 0.637763
Target:  5'- aGACGGGCcgcUGGAAGUCGGCGgGcgggggcgugauccGACCCg -3'
miRNA:   3'- -CUGUUCG---ACCUUCGGCUGCgU--------------CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 166643 0.66 0.962924
Target:  5'- cGACccgcGGCgUGGAcgcGCCGugGCAGucGCCUc -3'
miRNA:   3'- -CUGu---UCG-ACCUu--CGGCugCGUC--UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.