miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 164763 0.66 0.962924
Target:  5'- gGGCAAGCUgaGGAAGCggauccaguCGGCGCucAGACa- -3'
miRNA:   3'- -CUGUUCGA--CCUUCG---------GCUGCG--UCUGgg -5'
29946 5' -55.6 NC_006273.1 + 163964 0.7 0.839846
Target:  5'- -uUAAGCUGGAccuguugcgcaugauAGCCGuguCGCGcACCCg -3'
miRNA:   3'- cuGUUCGACCU---------------UCGGCu--GCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163850 0.68 0.894804
Target:  5'- cGGC-AGC-GGccGCCGGCGaGGGCCCu -3'
miRNA:   3'- -CUGuUCGaCCuuCGGCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163426 0.68 0.91878
Target:  5'- cGCGugGGCUGGaAAGCCG-UGCuGGGCCUc -3'
miRNA:   3'- cUGU--UCGACC-UUCGGCuGCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163413 0.66 0.969158
Target:  5'- cGC-AGCUGucuccacAGCCGGCGUuGGCCCc -3'
miRNA:   3'- cUGuUCGACcu-----UCGGCUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163021 0.66 0.962924
Target:  5'- gGACAcGC-GGgcGCCGGacaGCAGGCgCa -3'
miRNA:   3'- -CUGUuCGaCCuuCGGCUg--CGUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 161000 0.66 0.9595
Target:  5'- aGCGAGCUGcGcgucaCCGACGCcGGCCUu -3'
miRNA:   3'- cUGUUCGAC-Cuuc--GGCUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 158250 0.66 0.969158
Target:  5'- cGACGgcgguucgccguGGUUGuuGGCCGACGUAGcGCCg -3'
miRNA:   3'- -CUGU------------UCGACcuUCGGCUGCGUC-UGGg -5'
29946 5' -55.6 NC_006273.1 + 156335 0.66 0.966142
Target:  5'- cGCAGGCucUGGuGGC--GCGUGGGCCCa -3'
miRNA:   3'- cUGUUCG--ACCuUCGgcUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 149779 0.81 0.285294
Target:  5'- -cCGAGCUGGAAGCCGuguauCGCgAGAUCCu -3'
miRNA:   3'- cuGUUCGACCUUCGGCu----GCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 149559 0.67 0.939127
Target:  5'- cGGCGguGGUagUGGcguGGgCGACGCGGACCa -3'
miRNA:   3'- -CUGU--UCG--ACCu--UCgGCUGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 148707 0.71 0.803117
Target:  5'- cGGCAAGCUGGAGGUgGAacccUGCGcGCUCu -3'
miRNA:   3'- -CUGUUCGACCUUCGgCU----GCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 147567 0.67 0.931426
Target:  5'- cGCGGGUcguuaaauacuacgaUGGGAGCCGcCGCGG-CUCa -3'
miRNA:   3'- cUGUUCG---------------ACCUUCGGCuGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 147332 0.75 0.580925
Target:  5'- cGACGcguGCUGGAcGCCGACGCccagcgauuaacGGACgCCg -3'
miRNA:   3'- -CUGUu--CGACCUuCGGCUGCG------------UCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 145895 0.72 0.748567
Target:  5'- cGACGAGgUGGcGGgCGccACGCAGGCCUu -3'
miRNA:   3'- -CUGUUCgACCuUCgGC--UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 145684 0.72 0.748567
Target:  5'- cGCAuGCUGGgcGCUaGCGUGGACCUa -3'
miRNA:   3'- cUGUuCGACCuuCGGcUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 145003 0.71 0.806584
Target:  5'- cACAGGCUGGuguaucuccagucGUCGGCGCGGcauCCCa -3'
miRNA:   3'- cUGUUCGACCuu-----------CGGCUGCGUCu--GGG- -5'
29946 5' -55.6 NC_006273.1 + 144755 0.68 0.91878
Target:  5'- aACGuGCUgcGGAGGCaCGACGCGGcgGCCg -3'
miRNA:   3'- cUGUuCGA--CCUUCG-GCUGCGUC--UGGg -5'
29946 5' -55.6 NC_006273.1 + 142330 0.69 0.888256
Target:  5'- cGugGAGCUgcgcgcGGAAagucaggacagcGCCGugGCAucgGGCCCg -3'
miRNA:   3'- -CugUUCGA------CCUU------------CGGCugCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 141793 0.67 0.943645
Target:  5'- -uCAAGCcgcGGuacAGGCCG-CGCAGGCCg -3'
miRNA:   3'- cuGUUCGa--CC---UUCGGCuGCGUCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.