miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 235083 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 116694 0.71 0.794347
Target:  5'- -cCGAGCUGGuu-UCG-CGCGGGCCCg -3'
miRNA:   3'- cuGUUCGACCuucGGCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 213952 0.71 0.803117
Target:  5'- -gUAAGCUGGAAGgCGACGaGGACg- -3'
miRNA:   3'- cuGUUCGACCUUCgGCUGCgUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 148707 0.71 0.803117
Target:  5'- cGGCAAGCUGGAGGUgGAacccUGCGcGCUCu -3'
miRNA:   3'- -CUGUUCGACCUUCGgCU----GCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 81762 0.7 0.81174
Target:  5'- -cCGGGCUGcGAAcGCUGACGCcGGCCa -3'
miRNA:   3'- cuGUUCGAC-CUU-CGGCUGCGuCUGGg -5'
29946 5' -55.6 NC_006273.1 + 61979 0.7 0.836642
Target:  5'- uGAC-GGCUuuccaGAAGCUGuuGCAGACCCu -3'
miRNA:   3'- -CUGuUCGAc----CUUCGGCugCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 130863 0.7 0.836642
Target:  5'- cACAAGCUGucacuGCCG-CGC-GACCCg -3'
miRNA:   3'- cUGUUCGACcuu--CGGCuGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 200214 0.69 0.852369
Target:  5'- uACGAGCaGGGuuCUGAacaGCAGACCCc -3'
miRNA:   3'- cUGUUCGaCCUucGGCUg--CGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 252 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 68363 0.71 0.794347
Target:  5'- cGACGAGCaGcuGAGCaCGGCGCAGaACCUg -3'
miRNA:   3'- -CUGUUCGaCc-UUCG-GCUGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 197176 0.71 0.785437
Target:  5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3'
miRNA:   3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 168345 0.71 0.785437
Target:  5'- aAUGAGCUGGucGCCcuGAUGCAGAUgCa -3'
miRNA:   3'- cUGUUCGACCuuCGG--CUGCGUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 131529 0.76 0.493872
Target:  5'- cAUggGCUGGAGGaCCaGGCGguGAUCCg -3'
miRNA:   3'- cUGuuCGACCUUC-GG-CUGCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 21666 0.73 0.700348
Target:  5'- cACGGcGCUGGuGGCCGACGUgcacGACCUg -3'
miRNA:   3'- cUGUU-CGACCuUCGGCUGCGu---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 73544 0.72 0.71889
Target:  5'- cGACGAcucacguGCUccuccaGAGGCCGACGCgcGGACCCu -3'
miRNA:   3'- -CUGUU-------CGAc-----CUUCGGCUGCG--UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 113484 0.72 0.729512
Target:  5'- cGACcuGCUGGGuucggaugccguAGCCGGCGgCGGguuGCCCg -3'
miRNA:   3'- -CUGuuCGACCU------------UCGGCUGC-GUC---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 3672 0.72 0.729512
Target:  5'- cGAUcAGC-GGcauGCCGACGCcGACCCg -3'
miRNA:   3'- -CUGuUCGaCCuu-CGGCUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 233498 0.71 0.776396
Target:  5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3'
miRNA:   3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5'
29946 5' -55.6 NC_006273.1 + 210383 0.71 0.785437
Target:  5'- gGACcuGCUGcGAaaaguGGCCGGCGaagauaAGGCCCa -3'
miRNA:   3'- -CUGuuCGAC-CU-----UCGGCUGCg-----UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 113334 0.71 0.785437
Target:  5'- cGGCAAGCUGGGucgCGACGU--GCCCg -3'
miRNA:   3'- -CUGUUCGACCUucgGCUGCGucUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.