Results 41 - 60 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29946 | 5' | -55.6 | NC_006273.1 | + | 3672 | 0.72 | 0.729512 |
Target: 5'- cGAUcAGC-GGcauGCCGACGCcGACCCg -3' miRNA: 3'- -CUGuUCGaCCuu-CGGCUGCGuCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 113484 | 0.72 | 0.729512 |
Target: 5'- cGACcuGCUGGGuucggaugccguAGCCGGCGgCGGguuGCCCg -3' miRNA: 3'- -CUGuuCGACCU------------UCGGCUGC-GUC---UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 73544 | 0.72 | 0.71889 |
Target: 5'- cGACGAcucacguGCUccuccaGAGGCCGACGCgcGGACCCu -3' miRNA: 3'- -CUGUU-------CGAc-----CUUCGGCUGCG--UCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 21666 | 0.73 | 0.700348 |
Target: 5'- cACGGcGCUGGuGGCCGACGUgcacGACCUg -3' miRNA: 3'- cUGUU-CGACCuUCGGCUGCGu---CUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 131529 | 0.76 | 0.493872 |
Target: 5'- cAUggGCUGGAGGaCCaGGCGguGAUCCg -3' miRNA: 3'- cUGuuCGACCUUC-GG-CUGCguCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 148707 | 0.71 | 0.803117 |
Target: 5'- cGGCAAGCUGGAGGUgGAacccUGCGcGCUCu -3' miRNA: 3'- -CUGUUCGACCUUCGgCU----GCGUcUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 81762 | 0.7 | 0.81174 |
Target: 5'- -cCGGGCUGcGAAcGCUGACGCcGGCCa -3' miRNA: 3'- cuGUUCGAC-CUU-CGGCUGCGuCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 133483 | 0.68 | 0.894804 |
Target: 5'- uGCAGGCgcGGAcGCUGGCGgCGG-CCCg -3' miRNA: 3'- cUGUUCGa-CCUuCGGCUGC-GUCuGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 105099 | 0.68 | 0.894804 |
Target: 5'- uACAuGCUcGAGGCCGGCGCGG-CUg -3' miRNA: 3'- cUGUuCGAcCUUCGGCUGCGUCuGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 142330 | 0.69 | 0.888256 |
Target: 5'- cGugGAGCUgcgcgcGGAAagucaggacagcGCCGugGCAucgGGCCCg -3' miRNA: 3'- -CugUUCGA------CCUU------------CGGCugCGU---CUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 167183 | 0.69 | 0.888256 |
Target: 5'- cGGCGGGCgcagcggccgcGGAGGCCGGCGUAaacagcgucagcGGCCg -3' miRNA: 3'- -CUGUUCGa----------CCUUCGGCUGCGU------------CUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 216849 | 0.69 | 0.874516 |
Target: 5'- cGGCcGGCaugUGGucaaaAGGCCGgcaggcGCGCAGGCCCu -3' miRNA: 3'- -CUGuUCG---ACC-----UUCGGC------UGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 962 | 0.69 | 0.874516 |
Target: 5'- gGGCGuGCUGGgcGCCGGCGcCGGuaacgggaguuACCUg -3' miRNA: 3'- -CUGUuCGACCuuCGGCUGC-GUC-----------UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 100830 | 0.69 | 0.867334 |
Target: 5'- cGGCGGGgUaGGguGCCaGACGUAGACUCu -3' miRNA: 3'- -CUGUUCgA-CCuuCGG-CUGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 37263 | 0.69 | 0.867334 |
Target: 5'- cGACGAGgaGGAAgacGCCGugGCcgccgAGcaGCCCu -3' miRNA: 3'- -CUGUUCgaCCUU---CGGCugCG-----UC--UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 235083 | 0.69 | 0.85995 |
Target: 5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3' miRNA: 3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 252 | 0.69 | 0.85995 |
Target: 5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3' miRNA: 3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 200214 | 0.69 | 0.852369 |
Target: 5'- uACGAGCaGGGuuCUGAacaGCAGACCCc -3' miRNA: 3'- cUGUUCGaCCUucGGCUg--CGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 130863 | 0.7 | 0.836642 |
Target: 5'- cACAAGCUGucacuGCCG-CGC-GACCCg -3' miRNA: 3'- cUGUUCGACcuu--CGGCuGCGuCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 61979 | 0.7 | 0.836642 |
Target: 5'- uGAC-GGCUuuccaGAAGCUGuuGCAGACCCu -3' miRNA: 3'- -CUGuUCGAc----CUUCGGCugCGUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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