miRNA display CGI


Results 61 - 80 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 235083 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 196896 0.68 0.901134
Target:  5'- cGGCGAGCggcacGGAGacggaggccGCCGGCGgGGACgCg -3'
miRNA:   3'- -CUGUUCGa----CCUU---------CGGCUGCgUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 52526 0.68 0.907241
Target:  5'- aGACu-GCUGGggGCCGuugugcUGCAGcaGCCg -3'
miRNA:   3'- -CUGuuCGACCuuCGGCu-----GCGUC--UGGg -5'
29946 5' -55.6 NC_006273.1 + 86701 0.68 0.907241
Target:  5'- aGGCGAcGgaGGAgcuccagcAGCUGcGCGCAGACCUc -3'
miRNA:   3'- -CUGUU-CgaCCU--------UCGGC-UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 89442 0.68 0.913124
Target:  5'- aGCAgcGGCUGGAAGgccaCGGCGUagggauucAGAUCCa -3'
miRNA:   3'- cUGU--UCGACCUUCg---GCUGCG--------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 233541 0.68 0.913124
Target:  5'- cGCGGGgUGcGgcGCCGACGCGaacGGCUCg -3'
miRNA:   3'- cUGUUCgAC-CuuCGGCUGCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 133842 0.68 0.91878
Target:  5'- aGACGAGCucuUGcGAGGCUuuGAUGUAG-CCCg -3'
miRNA:   3'- -CUGUUCG---AC-CUUCGG--CUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 47475 0.68 0.91878
Target:  5'- gGACGaagAGCaGGAgaacgacggcgAGCCG-CGCgAGGCCCa -3'
miRNA:   3'- -CUGU---UCGaCCU-----------UCGGCuGCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 144755 0.68 0.91878
Target:  5'- aACGuGCUgcGGAGGCaCGACGCGGcgGCCg -3'
miRNA:   3'- cUGUuCGA--CCUUCG-GCUGCGUC--UGGg -5'
29946 5' -55.6 NC_006273.1 + 193639 0.68 0.901134
Target:  5'- aGCGAGuCUGGgcGUCGAUGgAGugCUg -3'
miRNA:   3'- cUGUUC-GACCuuCGGCUGCgUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 68276 0.68 0.901134
Target:  5'- aGAUcAGC---AGGCCGACGCGG-CCCg -3'
miRNA:   3'- -CUGuUCGaccUUCGGCUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 163850 0.68 0.894804
Target:  5'- cGGC-AGC-GGccGCCGGCGaGGGCCCu -3'
miRNA:   3'- -CUGuUCGaCCuuCGGCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 37263 0.69 0.867334
Target:  5'- cGACGAGgaGGAAgacGCCGugGCcgccgAGcaGCCCu -3'
miRNA:   3'- -CUGUUCgaCCUU---CGGCugCG-----UC--UGGG- -5'
29946 5' -55.6 NC_006273.1 + 100830 0.69 0.867334
Target:  5'- cGGCGGGgUaGGguGCCaGACGUAGACUCu -3'
miRNA:   3'- -CUGUUCgA-CCuuCGG-CUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 962 0.69 0.874516
Target:  5'- gGGCGuGCUGGgcGCCGGCGcCGGuaacgggaguuACCUg -3'
miRNA:   3'- -CUGUuCGACCuuCGGCUGC-GUC-----------UGGG- -5'
29946 5' -55.6 NC_006273.1 + 216849 0.69 0.874516
Target:  5'- cGGCcGGCaugUGGucaaaAGGCCGgcaggcGCGCAGGCCCu -3'
miRNA:   3'- -CUGuUCG---ACC-----UUCGGC------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 167183 0.69 0.888256
Target:  5'- cGGCGGGCgcagcggccgcGGAGGCCGGCGUAaacagcgucagcGGCCg -3'
miRNA:   3'- -CUGUUCGa----------CCUUCGGCUGCGU------------CUGGg -5'
29946 5' -55.6 NC_006273.1 + 142330 0.69 0.888256
Target:  5'- cGugGAGCUgcgcgcGGAAagucaggacagcGCCGugGCAucgGGCCCg -3'
miRNA:   3'- -CugUUCGA------CCUU------------CGGCugCGU---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 105099 0.68 0.894804
Target:  5'- uACAuGCUcGAGGCCGGCGCGG-CUg -3'
miRNA:   3'- cUGUuCGAcCUUCGGCUGCGUCuGGg -5'
29946 5' -55.6 NC_006273.1 + 133483 0.68 0.894804
Target:  5'- uGCAGGCgcGGAcGCUGGCGgCGG-CCCg -3'
miRNA:   3'- cUGUUCGa-CCUuCGGCUGC-GUCuGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.