Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29946 | 5' | -55.6 | NC_006273.1 | + | 41719 | 1.12 | 0.002882 |
Target: 5'- aGACAAGCUGGAAGCCGACGCAGACCCa -3' miRNA: 3'- -CUGUUCGACCUUCGGCUGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 2283 | 0.71 | 0.785437 |
Target: 5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3' miRNA: 3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 109306 | 0.71 | 0.794347 |
Target: 5'- cGACGAgguggaccGCUGGAuccggcacgcGGCCGGCGUAGAacggCCg -3' miRNA: 3'- -CUGUU--------CGACCU----------UCGGCUGCGUCUg---GG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 194247 | 0.66 | 0.969158 |
Target: 5'- aGCGAGgaGGAAGaCGACGacuccuCGGACaCCg -3' miRNA: 3'- cUGUUCgaCCUUCgGCUGC------GUCUG-GG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 147332 | 0.75 | 0.580925 |
Target: 5'- cGACGcguGCUGGAcGCCGACGCccagcgauuaacGGACgCCg -3' miRNA: 3'- -CUGUu--CGACCUuCGGCUGCG------------UCUG-GG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 37139 | 0.74 | 0.630764 |
Target: 5'- gGAgGuGCUGGcGGCCGugGCcuguGGCCCg -3' miRNA: 3'- -CUgUuCGACCuUCGGCugCGu---CUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 141114 | 0.74 | 0.639763 |
Target: 5'- aGGCAGGC-GGGAGCgGGCGCagcgugcGGACCg -3' miRNA: 3'- -CUGUUCGaCCUUCGgCUGCG-------UCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 140422 | 0.73 | 0.650756 |
Target: 5'- -cCGAGa-GGGAGCCGcCGCgAGACCCg -3' miRNA: 3'- cuGUUCgaCCUUCGGCuGCG-UCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 123473 | 0.72 | 0.739084 |
Target: 5'- --aGGGCgcccuuGAGCUGGCGCAGGCCCu -3' miRNA: 3'- cugUUCGacc---UUCGGCUGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 70834 | 0.71 | 0.785437 |
Target: 5'- cGGCAcGCUGGcGGGCCGAcCGCcgcGCCCu -3' miRNA: 3'- -CUGUuCGACC-UUCGGCU-GCGuc-UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 145895 | 0.72 | 0.748567 |
Target: 5'- cGACGAGgUGGcGGgCGccACGCAGGCCUu -3' miRNA: 3'- -CUGUUCgACCuUCgGC--UGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 118619 | 0.72 | 0.71986 |
Target: 5'- cGCcGGCUGGAgagcgagaGGCCGGCGUAGcuGCCg -3' miRNA: 3'- cUGuUCGACCU--------UCGGCUGCGUC--UGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 216691 | 0.8 | 0.326579 |
Target: 5'- uGCAGGCaucgUGGAGGCUGAUGUAGACaCCa -3' miRNA: 3'- cUGUUCG----ACCUUCGGCUGCGUCUG-GG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 5617 | 0.71 | 0.757019 |
Target: 5'- cGGCAAGUugcgcggUGGggGCgUGcccCGCAGACCCc -3' miRNA: 3'- -CUGUUCG-------ACCuuCG-GCu--GCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 115198 | 0.76 | 0.512766 |
Target: 5'- cGGCucGCUGGAAGCCGGuCGUcugcgacuccuGGACCUg -3' miRNA: 3'- -CUGuuCGACCUUCGGCU-GCG-----------UCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 140779 | 0.73 | 0.700348 |
Target: 5'- cGGCGGGUggaccgGGAAGCCGGCGgAGGuCgCCg -3' miRNA: 3'- -CUGUUCGa-----CCUUCGGCUGCgUCU-G-GG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 38605 | 0.71 | 0.776396 |
Target: 5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3' miRNA: 3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 28323 | 0.71 | 0.794347 |
Target: 5'- uACuGGCUGGAAcGUCaGCGCcGACCCg -3' miRNA: 3'- cUGuUCGACCUU-CGGcUGCGuCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 111383 | 0.75 | 0.54164 |
Target: 5'- gGACGAGCUGGAcaagcacagcGGCUcacCGCAGACCa -3' miRNA: 3'- -CUGUUCGACCU----------UCGGcu-GCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 167149 | 0.74 | 0.637763 |
Target: 5'- aGACGGGCcgcUGGAAGUCGGCGgGcgggggcgugauccGACCCg -3' miRNA: 3'- -CUGUUCG---ACCUUCGGCUGCgU--------------CUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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