miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 36842 0.7 0.820206
Target:  5'- aGACuGGCagGGAcacgcgcuacguAGCCGGuCGCGGACCg -3'
miRNA:   3'- -CUGuUCGa-CCU------------UCGGCU-GCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 109306 0.71 0.794347
Target:  5'- cGACGAgguggaccGCUGGAuccggcacgcGGCCGGCGUAGAacggCCg -3'
miRNA:   3'- -CUGUU--------CGACCU----------UCGGCUGCGUCUg---GG- -5'
29946 5' -55.6 NC_006273.1 + 118619 0.72 0.71986
Target:  5'- cGCcGGCUGGAgagcgagaGGCCGGCGUAGcuGCCg -3'
miRNA:   3'- cUGuUCGACCU--------UCGGCUGCGUC--UGGg -5'
29946 5' -55.6 NC_006273.1 + 111383 0.75 0.54164
Target:  5'- gGACGAGCUGGAcaagcacagcGGCUcacCGCAGACCa -3'
miRNA:   3'- -CUGUUCGACCU----------UCGGcu-GCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 30660 0.68 0.901134
Target:  5'- cGACGcGCcGGGcggcuuccugcGGCCGGcCGCGGugCCg -3'
miRNA:   3'- -CUGUuCGaCCU-----------UCGGCU-GCGUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 40190 0.69 0.85995
Target:  5'- cGCGGGCgcaaGGGAGgaGuCGCGGGCCCc -3'
miRNA:   3'- cUGUUCGa---CCUUCggCuGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 2283 0.71 0.785437
Target:  5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3'
miRNA:   3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 115198 0.76 0.512766
Target:  5'- cGGCucGCUGGAAGCCGGuCGUcugcgacuccuGGACCUg -3'
miRNA:   3'- -CUGuuCGACCUUCGGCU-GCG-----------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 81154 0.69 0.859201
Target:  5'- --gGAGCUGGGcGGCCGcacgaagcgguccACGUAGGCCa -3'
miRNA:   3'- cugUUCGACCU-UCGGC-------------UGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 216691 0.8 0.326579
Target:  5'- uGCAGGCaucgUGGAGGCUGAUGUAGACaCCa -3'
miRNA:   3'- cUGUUCG----ACCUUCGGCUGCGUCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 28323 0.71 0.794347
Target:  5'- uACuGGCUGGAAcGUCaGCGCcGACCCg -3'
miRNA:   3'- cUGuUCGACCUU-CGGcUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 47799 0.7 0.828509
Target:  5'- uGCGAGCUGuacggggaauacGAGcGCCGGuuCGCGGACCUg -3'
miRNA:   3'- cUGUUCGAC------------CUU-CGGCU--GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 5617 0.71 0.757019
Target:  5'- cGGCAAGUugcgcggUGGggGCgUGcccCGCAGACCCc -3'
miRNA:   3'- -CUGUUCG-------ACCuuCG-GCu--GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 123473 0.72 0.739084
Target:  5'- --aGGGCgcccuuGAGCUGGCGCAGGCCCu -3'
miRNA:   3'- cugUUCGacc---UUCGGCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 141114 0.74 0.639763
Target:  5'- aGGCAGGC-GGGAGCgGGCGCagcgugcGGACCg -3'
miRNA:   3'- -CUGUUCGaCCUUCGgCUGCG-------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 147332 0.75 0.580925
Target:  5'- cGACGcguGCUGGAcGCCGACGCccagcgauuaacGGACgCCg -3'
miRNA:   3'- -CUGUu--CGACCUuCGGCUGCG------------UCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 85109 0.68 0.913124
Target:  5'- -uUAAGCguuGAGCCGGaaaaacCGCAGGCCCu -3'
miRNA:   3'- cuGUUCGaccUUCGGCU------GCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 177247 0.68 0.901134
Target:  5'- cGugGuGC-GGAGGCCGcuGCGCGuGCCCg -3'
miRNA:   3'- -CugUuCGaCCUUCGGC--UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 31750 0.68 0.901134
Target:  5'- ---cGGCUGGucgGGCCGuCGCGGACg- -3'
miRNA:   3'- cuguUCGACCu--UCGGCuGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 99096 0.69 0.874516
Target:  5'- uGCGcGcCUGaGAGCCGauuaucggggcaGCGCAGACCCa -3'
miRNA:   3'- cUGUuC-GACcUUCGGC------------UGCGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.