miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29947 3' -57 NC_006273.1 + 140838 0.66 0.942106
Target:  5'- gAGCCCggGGAGGAGCGgGgUGgGGguGGGa -3'
miRNA:   3'- -UUGGG--CCUCCUUGUgC-GCgUUguCCC- -5'
29947 3' -57 NC_006273.1 + 149229 0.66 0.942106
Target:  5'- uGCUCGG-GGAAaAgGCGUugGACGGGGa -3'
miRNA:   3'- uUGGGCCuCCUUgUgCGCG--UUGUCCC- -5'
29947 3' -57 NC_006273.1 + 145309 0.66 0.942106
Target:  5'- cACCUGGuGG-GC-UGCGCcGCGGGGc -3'
miRNA:   3'- uUGGGCCuCCuUGuGCGCGuUGUCCC- -5'
29947 3' -57 NC_006273.1 + 40928 0.66 0.942106
Target:  5'- cGCUCGGGcGGACGCGUGCGGCGu-- -3'
miRNA:   3'- uUGGGCCUcCUUGUGCGCGUUGUccc -5'
29947 3' -57 NC_006273.1 + 108625 0.66 0.937562
Target:  5'- cGCCUcu-GGAcCACGCGCAGCgucAGGGc -3'
miRNA:   3'- uUGGGccuCCUuGUGCGCGUUG---UCCC- -5'
29947 3' -57 NC_006273.1 + 215634 0.66 0.937562
Target:  5'- cACCCaGAuaaGGAuguAgAUGCGCAACAGGa -3'
miRNA:   3'- uUGGGcCU---CCU---UgUGCGCGUUGUCCc -5'
29947 3' -57 NC_006273.1 + 136865 0.66 0.932797
Target:  5'- -uCCCGGAGGGgggaagagGCACGaCG-AGCgAGGGc -3'
miRNA:   3'- uuGGGCCUCCU--------UGUGC-GCgUUG-UCCC- -5'
29947 3' -57 NC_006273.1 + 41064 0.66 0.932797
Target:  5'- cGugCCGGggacgGGGGACuCuuGCGGCGGGGa -3'
miRNA:   3'- -UugGGCC-----UCCUUGuGcgCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 1126 0.66 0.932797
Target:  5'- cGugCCGGggacgGGGGACuCuuGCGGCGGGGa -3'
miRNA:   3'- -UugGGCC-----UCCUUGuGcgCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 195485 0.66 0.927809
Target:  5'- cACCUaGGAGGgu-GCGCGCu-CGGGGa -3'
miRNA:   3'- uUGGG-CCUCCuugUGCGCGuuGUCCC- -5'
29947 3' -57 NC_006273.1 + 196617 0.66 0.927809
Target:  5'- cGCUCGGAcgGGAGCuGCGC-CGGCGGuGGg -3'
miRNA:   3'- uUGGGCCU--CCUUG-UGCGcGUUGUC-CC- -5'
29947 3' -57 NC_006273.1 + 592 0.66 0.927809
Target:  5'- cACCUaGGAGGgu-GCGCGCu-CGGGGa -3'
miRNA:   3'- uUGGG-CCUCCuugUGCGCGuuGUCCC- -5'
29947 3' -57 NC_006273.1 + 188607 0.66 0.927809
Target:  5'- uAACgCCGGuuu-GCGCGCGCGGCAGa- -3'
miRNA:   3'- -UUG-GGCCuccuUGUGCGCGUUGUCcc -5'
29947 3' -57 NC_006273.1 + 1725 0.66 0.927809
Target:  5'- cGCUCGGAcgGGAGCuGCGC-CGGCGGuGGg -3'
miRNA:   3'- uUGGGCCU--CCUUG-UGCGcGUUGUC-CC- -5'
29947 3' -57 NC_006273.1 + 72188 0.66 0.927298
Target:  5'- gAAUUCGGAGGAACACG-GCAguuagagACuGGa -3'
miRNA:   3'- -UUGGGCCUCCUUGUGCgCGU-------UGuCCc -5'
29947 3' -57 NC_006273.1 + 81969 0.66 0.922597
Target:  5'- cGugCCGGugacGAGCAgCGCGCGGaAGGGa -3'
miRNA:   3'- -UugGGCCuc--CUUGU-GCGCGUUgUCCC- -5'
29947 3' -57 NC_006273.1 + 1964 0.67 0.917163
Target:  5'- uGCgCGGcGGGGC-CG-GCGACGGGGa -3'
miRNA:   3'- uUGgGCCuCCUUGuGCgCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 122578 0.67 0.917163
Target:  5'- -cUCCGG-GGAcgccagucGCAUGgGCAGCAGGu -3'
miRNA:   3'- uuGGGCCuCCU--------UGUGCgCGUUGUCCc -5'
29947 3' -57 NC_006273.1 + 35490 0.67 0.917163
Target:  5'- --aCCGGcguGGAGCugacauACGCGCAGCAGa- -3'
miRNA:   3'- uugGGCCu--CCUUG------UGCGCGUUGUCcc -5'
29947 3' -57 NC_006273.1 + 196856 0.67 0.917163
Target:  5'- uGCgCGGcGGGGC-CG-GCGACGGGGa -3'
miRNA:   3'- uUGgGCCuCCUUGuGCgCGUUGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.