miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29947 3' -57 NC_006273.1 + 156270 0.69 0.827329
Target:  5'- aAACCCGGguGGGAGCgACGCcGUcGCuGGGu -3'
miRNA:   3'- -UUGGGCC--UCCUUG-UGCG-CGuUGuCCC- -5'
29947 3' -57 NC_006273.1 + 94918 0.69 0.827329
Target:  5'- gGGCCCGGucAGGAGCuuCGgG-AGCGGGGu -3'
miRNA:   3'- -UUGGGCC--UCCUUGu-GCgCgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 191629 0.69 0.835396
Target:  5'- gAACCgCGcAGGAAcCACGCGgAACAuGGGa -3'
miRNA:   3'- -UUGG-GCcUCCUU-GUGCGCgUUGU-CCC- -5'
29947 3' -57 NC_006273.1 + 40915 0.69 0.827329
Target:  5'- cGGCCCGGuaacGGGAguUACGCugGgGACAGGGa -3'
miRNA:   3'- -UUGGGCCu---CCUU--GUGCG--CgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 195020 0.68 0.868756
Target:  5'- aAACCgGGGGcGAGCGCGgcuuugcaaucacgcCGCucGACGGGGa -3'
miRNA:   3'- -UUGGgCCUC-CUUGUGC---------------GCG--UUGUCCC- -5'
29947 3' -57 NC_006273.1 + 84408 0.68 0.865875
Target:  5'- uACCCuGGGccauaGAACACaCGCGAUAGGGg -3'
miRNA:   3'- uUGGGcCUC-----CUUGUGcGCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 230659 0.68 0.86515
Target:  5'- gGACCUGGAGaGAGCAgGCGgAccgagccAgAGGGa -3'
miRNA:   3'- -UUGGGCCUC-CUUGUgCGCgU-------UgUCCC- -5'
29947 3' -57 NC_006273.1 + 145685 0.68 0.858536
Target:  5'- -cCUCGGAcgaaggGGAGgACGaUGCGACGGGGa -3'
miRNA:   3'- uuGGGCCU------CCUUgUGC-GCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 228708 0.68 0.873018
Target:  5'- gAACCCGGGuGGGuuguucggaaACG-GCGgGACGGGGa -3'
miRNA:   3'- -UUGGGCCU-CCU----------UGUgCGCgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 191925 0.68 0.865875
Target:  5'- cAACCUGGAGGAGuCGCG-GCAugAcGGc -3'
miRNA:   3'- -UUGGGCCUCCUU-GUGCgCGUugUcCC- -5'
29947 3' -57 NC_006273.1 + 116484 0.68 0.872313
Target:  5'- uGCCgCGGGacguaguGGAgcacugguuGCACGCGCAGggcCAGGGa -3'
miRNA:   3'- uUGG-GCCU-------CCU---------UGUGCGCGUU---GUCCC- -5'
29947 3' -57 NC_006273.1 + 198213 0.68 0.858536
Target:  5'- uACCC-GAGGucuuuuGCACGCGCGACuuGGc -3'
miRNA:   3'- uUGGGcCUCCu-----UGUGCGCGUUGucCC- -5'
29947 3' -57 NC_006273.1 + 203117 0.68 0.865875
Target:  5'- -uCCCGcucgucgcguuGAGGAuaguCGCGCggugGCAGCGGGGg -3'
miRNA:   3'- uuGGGC-----------CUCCUu---GUGCG----CGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 233685 0.68 0.87996
Target:  5'- cGCCgCGGcGGAuuuccGCGCGgGgGACGGGGu -3'
miRNA:   3'- uUGG-GCCuCCU-----UGUGCgCgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 156874 0.68 0.865875
Target:  5'- cGCCCGGuguccGGGCG-GCGCcGCAGGGu -3'
miRNA:   3'- uUGGGCCuc---CUUGUgCGCGuUGUCCC- -5'
29947 3' -57 NC_006273.1 + 51583 0.68 0.873018
Target:  5'- ---aCGGAGGggUggcgGCG-GCAGCGGGGu -3'
miRNA:   3'- uuggGCCUCCuuG----UGCgCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 122578 0.67 0.917163
Target:  5'- -cUCCGG-GGAcgccagucGCAUGgGCAGCAGGu -3'
miRNA:   3'- uuGGGCCuCCU--------UGUGCgCGUUGUCCc -5'
29947 3' -57 NC_006273.1 + 35490 0.67 0.917163
Target:  5'- --aCCGGcguGGAGCugacauACGCGCAGCAGa- -3'
miRNA:   3'- uugGGCCu--CCUUG------UGCGCGUUGUCcc -5'
29947 3' -57 NC_006273.1 + 996 0.67 0.886695
Target:  5'- uACCUGGggacAGGGACGgggguUGCGCcgggGACGGGGg -3'
miRNA:   3'- uUGGGCC----UCCUUGU-----GCGCG----UUGUCCC- -5'
29947 3' -57 NC_006273.1 + 196856 0.67 0.917163
Target:  5'- uGCgCGGcGGGGC-CG-GCGACGGGGa -3'
miRNA:   3'- uUGgGCCuCCUUGuGCgCGUUGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.