Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29947 | 3' | -57 | NC_006273.1 | + | 6782 | 0.67 | 0.911507 |
Target: 5'- gAACCgcaGGAGGAGCugACGCuaCAGgAGGGg -3' miRNA: 3'- -UUGGg--CCUCCUUG--UGCGc-GUUgUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 145656 | 0.67 | 0.911507 |
Target: 5'- -uUCCGGGGGAAUgaugGgGCGCGGCGGu- -3' miRNA: 3'- uuGGGCCUCCUUG----UgCGCGUUGUCcc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 147969 | 0.67 | 0.90563 |
Target: 5'- cGCCCgaggcGGAGGAGCcgGCG-GCGGCGGuGGu -3' miRNA: 3'- uUGGG-----CCUCCUUG--UGCgCGUUGUC-CC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 8388 | 0.67 | 0.90563 |
Target: 5'- -uUUgGGGGGGACcggcgGCGCGaaaaGACAGGGa -3' miRNA: 3'- uuGGgCCUCCUUG-----UGCGCg---UUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 35860 | 0.67 | 0.899534 |
Target: 5'- uGCUCGGGGGAGCAuCGUggGCAACAu-- -3' miRNA: 3'- uUGGGCCUCCUUGU-GCG--CGUUGUccc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 93919 | 0.67 | 0.899534 |
Target: 5'- gGACCCGGuGc-GCAUGCGCGGgcCAGGa -3' miRNA: 3'- -UUGGGCCuCcuUGUGCGCGUU--GUCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 141509 | 0.67 | 0.893221 |
Target: 5'- gGACCUGGAGGuuGACgACGCcGUcuAACAGGu -3' miRNA: 3'- -UUGGGCCUCC--UUG-UGCG-CG--UUGUCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 132735 | 0.67 | 0.893221 |
Target: 5'- gAGCgCCGG-GGAG-ACGaCGaCAGCAGGGa -3' miRNA: 3'- -UUG-GGCCuCCUUgUGC-GC-GUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 113246 | 0.67 | 0.886695 |
Target: 5'- gGACgauaaCGGAGGAGCugGUGCAAgAGc- -3' miRNA: 3'- -UUGg----GCCUCCUUGugCGCGUUgUCcc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 996 | 0.67 | 0.886695 |
Target: 5'- uACCUGGggacAGGGACGgggguUGCGCcgggGACGGGGg -3' miRNA: 3'- uUGGGCC----UCCUUGU-----GCGCG----UUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 233685 | 0.68 | 0.87996 |
Target: 5'- cGCCgCGGcGGAuuuccGCGCGgGgGACGGGGu -3' miRNA: 3'- uUGG-GCCuCCU-----UGUGCgCgUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 51583 | 0.68 | 0.873018 |
Target: 5'- ---aCGGAGGggUggcgGCG-GCAGCGGGGu -3' miRNA: 3'- uuggGCCUCCuuG----UGCgCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 228708 | 0.68 | 0.873018 |
Target: 5'- gAACCCGGGuGGGuuguucggaaACG-GCGgGACGGGGa -3' miRNA: 3'- -UUGGGCCU-CCU----------UGUgCGCgUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 116484 | 0.68 | 0.872313 |
Target: 5'- uGCCgCGGGacguaguGGAgcacugguuGCACGCGCAGggcCAGGGa -3' miRNA: 3'- uUGG-GCCU-------CCU---------UGUGCGCGUU---GUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 195020 | 0.68 | 0.868756 |
Target: 5'- aAACCgGGGGcGAGCGCGgcuuugcaaucacgcCGCucGACGGGGa -3' miRNA: 3'- -UUGGgCCUC-CUUGUGC---------------GCG--UUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 203117 | 0.68 | 0.865875 |
Target: 5'- -uCCCGcucgucgcguuGAGGAuaguCGCGCggugGCAGCGGGGg -3' miRNA: 3'- uuGGGC-----------CUCCUu---GUGCG----CGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 156874 | 0.68 | 0.865875 |
Target: 5'- cGCCCGGuguccGGGCG-GCGCcGCAGGGu -3' miRNA: 3'- uUGGGCCuc---CUUGUgCGCGuUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 191925 | 0.68 | 0.865875 |
Target: 5'- cAACCUGGAGGAGuCGCG-GCAugAcGGc -3' miRNA: 3'- -UUGGGCCUCCUU-GUGCgCGUugUcCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 84408 | 0.68 | 0.865875 |
Target: 5'- uACCCuGGGccauaGAACACaCGCGAUAGGGg -3' miRNA: 3'- uUGGGcCUC-----CUUGUGcGCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 230659 | 0.68 | 0.86515 |
Target: 5'- gGACCUGGAGaGAGCAgGCGgAccgagccAgAGGGa -3' miRNA: 3'- -UUGGGCCUC-CUUGUgCGCgU-------UgUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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