Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29947 | 3' | -57 | NC_006273.1 | + | 172796 | 0.7 | 0.766637 |
Target: 5'- aGACCCGGGuGGAaaaacAUACGUucggGCGACAGGu -3' miRNA: 3'- -UUGGGCCU-CCU-----UGUGCG----CGUUGUCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 161839 | 0.72 | 0.651463 |
Target: 5'- cGGCCUcuGGAGGAGCACGUGagucguCGGCgAGGGg -3' miRNA: 3'- -UUGGG--CCUCCUUGUGCGC------GUUG-UCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 156874 | 0.68 | 0.865875 |
Target: 5'- cGCCCGGuguccGGGCG-GCGCcGCAGGGu -3' miRNA: 3'- uUGGGCCuc---CUUGUgCGCGuUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 156270 | 0.69 | 0.827329 |
Target: 5'- aAACCCGGguGGGAGCgACGCcGUcGCuGGGu -3' miRNA: 3'- -UUGGGCC--UCCUUG-UGCG-CGuUGuCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 150634 | 0.7 | 0.766637 |
Target: 5'- -uCCCGGAGGGuC-CGCGCAACAc-- -3' miRNA: 3'- uuGGGCCUCCUuGuGCGCGUUGUccc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 149229 | 0.66 | 0.942106 |
Target: 5'- uGCUCGG-GGAAaAgGCGUugGACGGGGa -3' miRNA: 3'- uUGGGCCuCCUUgUgCGCG--UUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 148667 | 0.74 | 0.543536 |
Target: 5'- cGGCCUGGAGGucUGCGCGCAGCugcuGGa -3' miRNA: 3'- -UUGGGCCUCCuuGUGCGCGUUGu---CCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 147969 | 0.67 | 0.90563 |
Target: 5'- cGCCCgaggcGGAGGAGCcgGCG-GCGGCGGuGGu -3' miRNA: 3'- uUGGG-----CCUCCUUG--UGCgCGUUGUC-CC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 145685 | 0.68 | 0.858536 |
Target: 5'- -cCUCGGAcgaaggGGAGgACGaUGCGACGGGGa -3' miRNA: 3'- uuGGGCCU------CCUUgUGC-GCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 145656 | 0.67 | 0.911507 |
Target: 5'- -uUCCGGGGGAAUgaugGgGCGCGGCGGu- -3' miRNA: 3'- uuGGGCCUCCUUG----UgCGCGUUGUCcc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 145309 | 0.66 | 0.942106 |
Target: 5'- cACCUGGuGG-GC-UGCGCcGCGGGGc -3' miRNA: 3'- uUGGGCCuCCuUGuGCGCGuUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 141509 | 0.67 | 0.893221 |
Target: 5'- gGACCUGGAGGuuGACgACGCcGUcuAACAGGu -3' miRNA: 3'- -UUGGGCCUCC--UUG-UGCG-CG--UUGUCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 140838 | 0.66 | 0.942106 |
Target: 5'- gAGCCCggGGAGGAGCGgGgUGgGGguGGGa -3' miRNA: 3'- -UUGGG--CCUCCUUGUgC-GCgUUguCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 140618 | 0.77 | 0.391417 |
Target: 5'- aAGCCCGGAGGGGCccaaaaGC-CAGCGGGGc -3' miRNA: 3'- -UUGGGCCUCCUUGug----CGcGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 136865 | 0.66 | 0.932797 |
Target: 5'- -uCCCGGAGGGgggaagagGCACGaCG-AGCgAGGGc -3' miRNA: 3'- uuGGGCCUCCU--------UGUGC-GCgUUG-UCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 132735 | 0.67 | 0.893221 |
Target: 5'- gAGCgCCGG-GGAG-ACGaCGaCAGCAGGGa -3' miRNA: 3'- -UUG-GGCCuCCUUgUGC-GC-GUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 122578 | 0.67 | 0.917163 |
Target: 5'- -cUCCGG-GGAcgccagucGCAUGgGCAGCAGGu -3' miRNA: 3'- uuGGGCCuCCU--------UGUGCgCGUUGUCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 121470 | 0.72 | 0.661328 |
Target: 5'- gAGCCCaGAGuGGACACacggugaCGCGGCAGGGu -3' miRNA: 3'- -UUGGGcCUC-CUUGUGc------GCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 117972 | 0.77 | 0.407881 |
Target: 5'- cACCUGGAGGAGC-CGUaGCGGCGGGa -3' miRNA: 3'- uUGGGCCUCCUUGuGCG-CGUUGUCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 116484 | 0.68 | 0.872313 |
Target: 5'- uGCCgCGGGacguaguGGAgcacugguuGCACGCGCAGggcCAGGGa -3' miRNA: 3'- uUGG-GCCU-------CCU---------UGUGCGCGUU---GUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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