Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29947 | 3' | -57 | NC_006273.1 | + | 113522 | 0.77 | 0.394675 |
Target: 5'- uGCCCGGGGGGcGCGCGgGCGgcgaagagaagggcuACGGGGg -3' miRNA: 3'- uUGGGCCUCCU-UGUGCgCGU---------------UGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 113246 | 0.67 | 0.886695 |
Target: 5'- gGACgauaaCGGAGGAGCugGUGCAAgAGc- -3' miRNA: 3'- -UUGg----GCCUCCUUGugCGCGUUgUCcc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 112216 | 0.74 | 0.572626 |
Target: 5'- --gCUGGAGGAcgcggcggugGCaAUGCGCGGCGGGGg -3' miRNA: 3'- uugGGCCUCCU----------UG-UGCGCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 108625 | 0.66 | 0.937562 |
Target: 5'- cGCCUcu-GGAcCACGCGCAGCgucAGGGc -3' miRNA: 3'- uUGGGccuCCUuGUGCGCGUUG---UCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 94918 | 0.69 | 0.827329 |
Target: 5'- gGGCCCGGucAGGAGCuuCGgG-AGCGGGGu -3' miRNA: 3'- -UUGGGCC--UCCUUGu-GCgCgUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 94516 | 0.73 | 0.592226 |
Target: 5'- cGGCCCGGGGGGAC-C-CG-AGCGGGGg -3' miRNA: 3'- -UUGGGCCUCCUUGuGcGCgUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 93919 | 0.67 | 0.899534 |
Target: 5'- gGACCCGGuGc-GCAUGCGCGGgcCAGGa -3' miRNA: 3'- -UUGGGCCuCcuUGUGCGCGUU--GUCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 84408 | 0.68 | 0.865875 |
Target: 5'- uACCCuGGGccauaGAACACaCGCGAUAGGGg -3' miRNA: 3'- uUGGGcCUC-----CUUGUGcGCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 83469 | 0.7 | 0.793478 |
Target: 5'- uGCCUGGAGGAGCAgauccaGuCGCAGguGGa -3' miRNA: 3'- uUGGGCCUCCUUGUg-----C-GCGUUguCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 81969 | 0.66 | 0.922597 |
Target: 5'- cGugCCGGugacGAGCAgCGCGCGGaAGGGa -3' miRNA: 3'- -UugGGCCuc--CUUGU-GCGCGUUgUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 72188 | 0.66 | 0.927298 |
Target: 5'- gAAUUCGGAGGAACACG-GCAguuagagACuGGa -3' miRNA: 3'- -UUGGGCCUCCUUGUGCgCGU-------UGuCCc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 51583 | 0.68 | 0.873018 |
Target: 5'- ---aCGGAGGggUggcgGCG-GCAGCGGGGu -3' miRNA: 3'- uuggGCCUCCuuG----UGCgCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 41064 | 0.66 | 0.932797 |
Target: 5'- cGugCCGGggacgGGGGACuCuuGCGGCGGGGa -3' miRNA: 3'- -UugGGCC-----UCCUUGuGcgCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 40928 | 0.66 | 0.942106 |
Target: 5'- cGCUCGGGcGGACGCGUGCGGCGu-- -3' miRNA: 3'- uUGGGCCUcCUUGUGCGCGUUGUccc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 40915 | 0.69 | 0.827329 |
Target: 5'- cGGCCCGGuaacGGGAguUACGCugGgGACAGGGa -3' miRNA: 3'- -UUGGGCCu---CCUU--GUGCG--CgUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 39863 | 1.07 | 0.004868 |
Target: 5'- gAACCCGGAGGAACACGCGCAACAGGGc -3' miRNA: 3'- -UUGGGCCUCCUUGUGCGCGUUGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 39412 | 0.71 | 0.729326 |
Target: 5'- uACUCGGAGGGGCGCcCGgCGgcccGCGGGGu -3' miRNA: 3'- uUGGGCCUCCUUGUGcGC-GU----UGUCCC- -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 35860 | 0.67 | 0.899534 |
Target: 5'- uGCUCGGGGGAGCAuCGUggGCAACAu-- -3' miRNA: 3'- uUGGGCCUCCUUGU-GCG--CGUUGUccc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 35490 | 0.67 | 0.917163 |
Target: 5'- --aCCGGcguGGAGCugacauACGCGCAGCAGa- -3' miRNA: 3'- uugGGCCu--CCUUG------UGCGCGUUGUCcc -5' |
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29947 | 3' | -57 | NC_006273.1 | + | 8388 | 0.67 | 0.90563 |
Target: 5'- -uUUgGGGGGGACcggcgGCGCGaaaaGACAGGGa -3' miRNA: 3'- uuGGgCCUCCUUG-----UGCGCg---UUGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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