miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29947 3' -57 NC_006273.1 + 94516 0.73 0.592226
Target:  5'- cGGCCCGGGGGGAC-C-CG-AGCGGGGg -3'
miRNA:   3'- -UUGGGCCUCCUUGuGcGCgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 204197 0.73 0.608973
Target:  5'- cAGCCUGGAcgccggccggcaauGGAGCACGCuccgguuacagGCAcuGCAGGGg -3'
miRNA:   3'- -UUGGGCCU--------------CCUUGUGCG-----------CGU--UGUCCC- -5'
29947 3' -57 NC_006273.1 + 217429 0.72 0.671171
Target:  5'- cAGCgCCGGAGGAucguACugGCGCAgAUAGaGGc -3'
miRNA:   3'- -UUG-GGCCUCCU----UGugCGCGU-UGUC-CC- -5'
29947 3' -57 NC_006273.1 + 234305 0.71 0.729326
Target:  5'- uACUCGGAGGGGCGCcCGgCGgcccGCGGGGu -3'
miRNA:   3'- uUGGGCCUCCUUGUGcGC-GU----UGUCCC- -5'
29947 3' -57 NC_006273.1 + 200307 0.7 0.748172
Target:  5'- cACCUGG-GGAACACaCGCGGCAuauuucuuGGGg -3'
miRNA:   3'- uUGGGCCuCCUUGUGcGCGUUGU--------CCC- -5'
29947 3' -57 NC_006273.1 + 84408 0.68 0.865875
Target:  5'- uACCCuGGGccauaGAACACaCGCGAUAGGGg -3'
miRNA:   3'- uUGGGcCUC-----CUUGUGcGCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 230659 0.68 0.86515
Target:  5'- gGACCUGGAGaGAGCAgGCGgAccgagccAgAGGGa -3'
miRNA:   3'- -UUGGGCCUC-CUUGUgCGCgU-------UgUCCC- -5'
29947 3' -57 NC_006273.1 + 145685 0.68 0.858536
Target:  5'- -cCUCGGAcgaaggGGAGgACGaUGCGACGGGGa -3'
miRNA:   3'- uuGGGCCU------CCUUgUGC-GCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 191629 0.69 0.835396
Target:  5'- gAACCgCGcAGGAAcCACGCGgAACAuGGGa -3'
miRNA:   3'- -UUGG-GCcUCCUU-GUGCGCgUUGU-CCC- -5'
29947 3' -57 NC_006273.1 + 94918 0.69 0.827329
Target:  5'- gGGCCCGGucAGGAGCuuCGgG-AGCGGGGu -3'
miRNA:   3'- -UUGGGCC--UCCUUGu-GCgCgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 156270 0.69 0.827329
Target:  5'- aAACCCGGguGGGAGCgACGCcGUcGCuGGGu -3'
miRNA:   3'- -UUGGGCC--UCCUUG-UGCG-CGuUGuCCC- -5'
29947 3' -57 NC_006273.1 + 150634 0.7 0.766637
Target:  5'- -uCCCGGAGGGuC-CGCGCAACAc-- -3'
miRNA:   3'- uuGGGCCUCCUuGuGCGCGUUGUccc -5'
29947 3' -57 NC_006273.1 + 39412 0.71 0.729326
Target:  5'- uACUCGGAGGGGCGCcCGgCGgcccGCGGGGu -3'
miRNA:   3'- uUGGGCCUCCUUGUGcGC-GU----UGUCCC- -5'
29947 3' -57 NC_006273.1 + 121470 0.72 0.661328
Target:  5'- gAGCCCaGAGuGGACACacggugaCGCGGCAGGGu -3'
miRNA:   3'- -UUGGGcCUC-CUUGUGc------GCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 161839 0.72 0.651463
Target:  5'- cGGCCUcuGGAGGAGCACGUGagucguCGGCgAGGGg -3'
miRNA:   3'- -UUGGG--CCUCCUUGUGCGC------GUUG-UCCC- -5'
29947 3' -57 NC_006273.1 + 189367 0.73 0.60207
Target:  5'- uGCUCGuGAGGcGGCACGCGUGuGCGGGGa -3'
miRNA:   3'- uUGGGC-CUCC-UUGUGCGCGU-UGUCCC- -5'
29947 3' -57 NC_006273.1 + 148667 0.74 0.543536
Target:  5'- cGGCCUGGAGGucUGCGCGCAGCugcuGGa -3'
miRNA:   3'- -UUGGGCCUCCuuGUGCGCGUUGu---CCc -5'
29947 3' -57 NC_006273.1 + 117972 0.77 0.407881
Target:  5'- cACCUGGAGGAGC-CGUaGCGGCGGGa -3'
miRNA:   3'- uUGGGCCUCCUUGuGCG-CGUUGUCCc -5'
29947 3' -57 NC_006273.1 + 140618 0.77 0.391417
Target:  5'- aAGCCCGGAGGGGCccaaaaGC-CAGCGGGGc -3'
miRNA:   3'- -UUGGGCCUCCUUGug----CGcGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 145309 0.66 0.942106
Target:  5'- cACCUGGuGG-GC-UGCGCcGCGGGGc -3'
miRNA:   3'- uUGGGCCuCCuUGuGCGCGuUGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.