miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29947 3' -57 NC_006273.1 + 39863 1.07 0.004868
Target:  5'- gAACCCGGAGGAACACGCGCAACAGGGc -3'
miRNA:   3'- -UUGGGCCUCCUUGUGCGCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 228708 0.68 0.873018
Target:  5'- gAACCCGGGuGGGuuguucggaaACG-GCGgGACGGGGa -3'
miRNA:   3'- -UUGGGCCU-CCU----------UGUgCGCgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 35860 0.67 0.899534
Target:  5'- uGCUCGGGGGAGCAuCGUggGCAACAu-- -3'
miRNA:   3'- uUGGGCCUCCUUGU-GCG--CGUUGUccc -5'
29947 3' -57 NC_006273.1 + 145309 0.66 0.942106
Target:  5'- cACCUGGuGG-GC-UGCGCcGCGGGGc -3'
miRNA:   3'- uUGGGCCuCCuUGuGCGCGuUGUCCC- -5'
29947 3' -57 NC_006273.1 + 189367 0.73 0.60207
Target:  5'- uGCUCGuGAGGcGGCACGCGUGuGCGGGGa -3'
miRNA:   3'- uUGGGC-CUCC-UUGUGCGCGU-UGUCCC- -5'
29947 3' -57 NC_006273.1 + 161839 0.72 0.651463
Target:  5'- cGGCCUcuGGAGGAGCACGUGagucguCGGCgAGGGg -3'
miRNA:   3'- -UUGGG--CCUCCUUGUGCGC------GUUG-UCCC- -5'
29947 3' -57 NC_006273.1 + 39412 0.71 0.729326
Target:  5'- uACUCGGAGGGGCGCcCGgCGgcccGCGGGGu -3'
miRNA:   3'- uUGGGCCUCCUUGUGcGC-GU----UGUCCC- -5'
29947 3' -57 NC_006273.1 + 150634 0.7 0.766637
Target:  5'- -uCCCGGAGGGuC-CGCGCAACAc-- -3'
miRNA:   3'- uuGGGCCUCCUuGuGCGCGUUGUccc -5'
29947 3' -57 NC_006273.1 + 83469 0.7 0.793478
Target:  5'- uGCCUGGAGGAGCAgauccaGuCGCAGguGGa -3'
miRNA:   3'- uUGGGCCUCCUUGUg-----C-GCGUUguCCc -5'
29947 3' -57 NC_006273.1 + 195020 0.68 0.868756
Target:  5'- aAACCgGGGGcGAGCGCGgcuuugcaaucacgcCGCucGACGGGGa -3'
miRNA:   3'- -UUGGgCCUC-CUUGUGC---------------GCG--UUGUCCC- -5'
29947 3' -57 NC_006273.1 + 198213 0.68 0.858536
Target:  5'- uACCC-GAGGucuuuuGCACGCGCGACuuGGc -3'
miRNA:   3'- uUGGGcCUCCu-----UGUGCGCGUUGucCC- -5'
29947 3' -57 NC_006273.1 + 213631 0.7 0.775706
Target:  5'- cAACCUGGAGGGAuCGgGCGUccACAGGu -3'
miRNA:   3'- -UUGGGCCUCCUU-GUgCGCGu-UGUCCc -5'
29947 3' -57 NC_006273.1 + 140618 0.77 0.391417
Target:  5'- aAGCCCGGAGGGGCccaaaaGC-CAGCGGGGc -3'
miRNA:   3'- -UUGGGCCUCCUUGug----CGcGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 156874 0.68 0.865875
Target:  5'- cGCCCGGuguccGGGCG-GCGCcGCAGGGu -3'
miRNA:   3'- uUGGGCCuc---CUUGUgCGCGuUGUCCC- -5'
29947 3' -57 NC_006273.1 + 117972 0.77 0.407881
Target:  5'- cACCUGGAGGAGC-CGUaGCGGCGGGa -3'
miRNA:   3'- uUGGGCCUCCUUGuGCG-CGUUGUCCc -5'
29947 3' -57 NC_006273.1 + 172796 0.7 0.766637
Target:  5'- aGACCCGGGuGGAaaaacAUACGUucggGCGACAGGu -3'
miRNA:   3'- -UUGGGCCU-CCU-----UGUGCG----CGUUGUCCc -5'
29947 3' -57 NC_006273.1 + 203117 0.68 0.865875
Target:  5'- -uCCCGcucgucgcguuGAGGAuaguCGCGCggugGCAGCGGGGg -3'
miRNA:   3'- uuGGGC-----------CUCCUu---GUGCG----CGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 233685 0.68 0.87996
Target:  5'- cGCCgCGGcGGAuuuccGCGCGgGgGACGGGGu -3'
miRNA:   3'- uUGG-GCCuCCU-----UGUGCgCgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 148667 0.74 0.543536
Target:  5'- cGGCCUGGAGGucUGCGCGCAGCugcuGGa -3'
miRNA:   3'- -UUGGGCCUCCuuGUGCGCGUUGu---CCc -5'
29947 3' -57 NC_006273.1 + 121470 0.72 0.661328
Target:  5'- gAGCCCaGAGuGGACACacggugaCGCGGCAGGGu -3'
miRNA:   3'- -UUGGGcCUC-CUUGUGc------GCGUUGUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.