miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29947 3' -57 NC_006273.1 + 195020 0.68 0.868756
Target:  5'- aAACCgGGGGcGAGCGCGgcuuugcaaucacgcCGCucGACGGGGa -3'
miRNA:   3'- -UUGGgCCUC-CUUGUGC---------------GCG--UUGUCCC- -5'
29947 3' -57 NC_006273.1 + 198213 0.68 0.858536
Target:  5'- uACCC-GAGGucuuuuGCACGCGCGACuuGGc -3'
miRNA:   3'- uUGGGcCUCCu-----UGUGCGCGUUGucCC- -5'
29947 3' -57 NC_006273.1 + 145309 0.66 0.942106
Target:  5'- cACCUGGuGG-GC-UGCGCcGCGGGGc -3'
miRNA:   3'- uUGGGCCuCCuUGuGCGCGuUGUCCC- -5'
29947 3' -57 NC_006273.1 + 188607 0.66 0.927809
Target:  5'- uAACgCCGGuuu-GCGCGCGCGGCAGa- -3'
miRNA:   3'- -UUG-GGCCuccuUGUGCGCGUUGUCcc -5'
29947 3' -57 NC_006273.1 + 35860 0.67 0.899534
Target:  5'- uGCUCGGGGGAGCAuCGUggGCAACAu-- -3'
miRNA:   3'- uUGGGCCUCCUUGU-GCG--CGUUGUccc -5'
29947 3' -57 NC_006273.1 + 40915 0.69 0.827329
Target:  5'- cGGCCCGGuaacGGGAguUACGCugGgGACAGGGa -3'
miRNA:   3'- -UUGGGCCu---CCUU--GUGCG--CgUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 1725 0.66 0.927809
Target:  5'- cGCUCGGAcgGGAGCuGCGC-CGGCGGuGGg -3'
miRNA:   3'- uUGGGCCU--CCUUG-UGCGcGUUGUC-CC- -5'
29947 3' -57 NC_006273.1 + 83469 0.7 0.793478
Target:  5'- uGCCUGGAGGAGCAgauccaGuCGCAGguGGa -3'
miRNA:   3'- uUGGGCCUCCUUGUg-----C-GCGUUguCCc -5'
29947 3' -57 NC_006273.1 + 213631 0.7 0.775706
Target:  5'- cAACCUGGAGGGAuCGgGCGUccACAGGu -3'
miRNA:   3'- -UUGGGCCUCCUU-GUgCGCGu-UGUCCc -5'
29947 3' -57 NC_006273.1 + 147969 0.67 0.90563
Target:  5'- cGCCCgaggcGGAGGAGCcgGCG-GCGGCGGuGGu -3'
miRNA:   3'- uUGGG-----CCUCCUUG--UGCgCGUUGUC-CC- -5'
29947 3' -57 NC_006273.1 + 108625 0.66 0.937562
Target:  5'- cGCCUcu-GGAcCACGCGCAGCgucAGGGc -3'
miRNA:   3'- uUGGGccuCCUuGUGCGCGUUG---UCCC- -5'
29947 3' -57 NC_006273.1 + 203117 0.68 0.865875
Target:  5'- -uCCCGcucgucgcguuGAGGAuaguCGCGCggugGCAGCGGGGg -3'
miRNA:   3'- uuGGGC-----------CUCCUu---GUGCG----CGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 156874 0.68 0.865875
Target:  5'- cGCCCGGuguccGGGCG-GCGCcGCAGGGu -3'
miRNA:   3'- uUGGGCCuc---CUUGUgCGCGuUGUCCC- -5'
29947 3' -57 NC_006273.1 + 1964 0.67 0.917163
Target:  5'- uGCgCGGcGGGGC-CG-GCGACGGGGa -3'
miRNA:   3'- uUGgGCCuCCUUGuGCgCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 592 0.66 0.927809
Target:  5'- cACCUaGGAGGgu-GCGCGCu-CGGGGa -3'
miRNA:   3'- uUGGG-CCUCCuugUGCGCGuuGUCCC- -5'
29947 3' -57 NC_006273.1 + 191925 0.68 0.865875
Target:  5'- cAACCUGGAGGAGuCGCG-GCAugAcGGc -3'
miRNA:   3'- -UUGGGCCUCCUU-GUGCgCGUugUcCC- -5'
29947 3' -57 NC_006273.1 + 84408 0.68 0.865875
Target:  5'- uACCCuGGGccauaGAACACaCGCGAUAGGGg -3'
miRNA:   3'- uUGGGcCUC-----CUUGUGcGCGUUGUCCC- -5'
29947 3' -57 NC_006273.1 + 215634 0.66 0.937562
Target:  5'- cACCCaGAuaaGGAuguAgAUGCGCAACAGGa -3'
miRNA:   3'- uUGGGcCU---CCU---UgUGCGCGUUGUCCc -5'
29947 3' -57 NC_006273.1 + 195485 0.66 0.927809
Target:  5'- cACCUaGGAGGgu-GCGCGCu-CGGGGa -3'
miRNA:   3'- uUGGG-CCUCCuugUGCGCGuuGUCCC- -5'
29947 3' -57 NC_006273.1 + 1126 0.66 0.932797
Target:  5'- cGugCCGGggacgGGGGACuCuuGCGGCGGGGa -3'
miRNA:   3'- -UugGGCC-----UCCUUGuGcgCGUUGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.