miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29947 5' -62.4 NC_006273.1 + 148013 0.66 0.751059
Target:  5'- aUCCgCGuguuGGCGCGCACCUUCaCgccGGUg -3'
miRNA:   3'- cAGGgGC----UCGCGCGUGGGAG-Gau-CCA- -5'
29947 5' -62.4 NC_006273.1 + 164698 0.66 0.732851
Target:  5'- -aUCUCGAGUugccGCGCGCCCUCCa---- -3'
miRNA:   3'- caGGGGCUCG----CGCGUGGGAGGaucca -5'
29947 5' -62.4 NC_006273.1 + 93853 0.66 0.723628
Target:  5'- -gCCUCGAGUGCGCAUgCgCCgGGGa -3'
miRNA:   3'- caGGGGCUCGCGCGUGgGaGGaUCCa -5'
29947 5' -62.4 NC_006273.1 + 171623 0.66 0.714336
Target:  5'- cGUCCuCCGAGagGCGCGCCCggCCa---- -3'
miRNA:   3'- -CAGG-GGCUCg-CGCGUGGGa-GGaucca -5'
29947 5' -62.4 NC_006273.1 + 187173 0.66 0.695576
Target:  5'- gGUCCCUGgaAGCGUGUgugggccgGCCCUCg-GGGUg -3'
miRNA:   3'- -CAGGGGC--UCGCGCG--------UGGGAGgaUCCA- -5'
29947 5' -62.4 NC_006273.1 + 123970 0.67 0.686122
Target:  5'- --aCCCGGGUGCu--CCUUCCUGGGa -3'
miRNA:   3'- cagGGGCUCGCGcguGGGAGGAUCCa -5'
29947 5' -62.4 NC_006273.1 + 122246 0.67 0.676629
Target:  5'- ---aCUGAGCgGCGCGCCCUCUgcGGc -3'
miRNA:   3'- caggGGCUCG-CGCGUGGGAGGauCCa -5'
29947 5' -62.4 NC_006273.1 + 29779 0.67 0.667104
Target:  5'- --gCCCGAcGCGCGCAaaCUCCaugAGGUu -3'
miRNA:   3'- cagGGGCU-CGCGCGUggGAGGa--UCCA- -5'
29947 5' -62.4 NC_006273.1 + 204719 0.68 0.627867
Target:  5'- -gCCCCGAG-GCGCGCCCgcugcgaUCUgcGGUu -3'
miRNA:   3'- caGGGGCUCgCGCGUGGG-------AGGauCCA- -5'
29947 5' -62.4 NC_006273.1 + 93643 0.68 0.600115
Target:  5'- aUCCaCUGGcGCcgGCGCGCCCUgCUGGGa -3'
miRNA:   3'- cAGG-GGCU-CG--CGCGUGGGAgGAUCCa -5'
29947 5' -62.4 NC_006273.1 + 195247 0.68 0.581069
Target:  5'- uGUCCCCaAGgaccCGCGCugCCguccCCUGGGg -3'
miRNA:   3'- -CAGGGGcUC----GCGCGugGGa---GGAUCCa -5'
29947 5' -62.4 NC_006273.1 + 235185 0.68 0.581069
Target:  5'- uGUCCCCaAGgaccCGCGCugCCguccCCUGGGg -3'
miRNA:   3'- -CAGGGGcUC----GCGCGugGGa---GGAUCCa -5'
29947 5' -62.4 NC_006273.1 + 354 0.68 0.581069
Target:  5'- uGUCCCCaAGgaccCGCGCugCCguccCCUGGGg -3'
miRNA:   3'- -CAGGGGcUC----GCGCGugGGa---GGAUCCa -5'
29947 5' -62.4 NC_006273.1 + 121036 0.69 0.552753
Target:  5'- -gCCCUGGGCG-GCACCCUCgUcgugccggucccAGGUg -3'
miRNA:   3'- caGGGGCUCGCgCGUGGGAGgA------------UCCA- -5'
29947 5' -62.4 NC_006273.1 + 61745 0.71 0.45347
Target:  5'- -aCCgCGAGCgccguGCGCGCCUUCgUGGGUg -3'
miRNA:   3'- caGGgGCUCG-----CGCGUGGGAGgAUCCA- -5'
29947 5' -62.4 NC_006273.1 + 129937 0.71 0.4198
Target:  5'- -aCCgCCGGGCGCGCGCUgUCCUAc-- -3'
miRNA:   3'- caGG-GGCUCGCGCGUGGgAGGAUcca -5'
29947 5' -62.4 NC_006273.1 + 39900 0.95 0.011163
Target:  5'- gGUCCCCGAGCGCGCACCCU-CUAGGUg -3'
miRNA:   3'- -CAGGGGCUCGCGCGUGGGAgGAUCCA- -5'
29947 5' -62.4 NC_006273.1 + 234792 1.07 0.001764
Target:  5'- gGUCCCCGAGCGCGCACCCUCCUAGGUg -3'
miRNA:   3'- -CAGGGGCUCGCGCGUGGGAGGAUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.