miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29949 5' -52 NC_006273.1 + 234239 1.09 0.009857
Target:  5'- gCUCCACCGGAAUCUGAGACAGCAACAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 39346 1.09 0.009857
Target:  5'- gCUCCACCGGAAUCUGAGACAGCAACAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 118326 0.78 0.598396
Target:  5'- -aCCGCguCGGGuUCUGAGGCGGCAACGg -3'
miRNA:   3'- gaGGUG--GCCUuAGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 111789 0.76 0.700637
Target:  5'- -aCCGCCGGAcUCUGGGuCAcGCGGCAu -3'
miRNA:   3'- gaGGUGGCCUuAGACUCuGU-CGUUGU- -5'
29949 5' -52 NC_006273.1 + 214112 0.74 0.796996
Target:  5'- -aCCACCGGAggcgcAUC-GAGACAGCAGu- -3'
miRNA:   3'- gaGGUGGCCU-----UAGaCUCUGUCGUUgu -5'
29949 5' -52 NC_006273.1 + 38831 0.74 0.814759
Target:  5'- --gCGCCGG---CUGAGGCAGCAGCGu -3'
miRNA:   3'- gagGUGGCCuuaGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 233723 0.74 0.814759
Target:  5'- --gCGCCGG---CUGAGGCAGCAGCGu -3'
miRNA:   3'- gagGUGGCCuuaGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 150769 0.73 0.863792
Target:  5'- -gCCGCCGGGcgCUGuGguGCAGCAGCc -3'
miRNA:   3'- gaGGUGGCCUuaGACuC--UGUCGUUGu -5'
29949 5' -52 NC_006273.1 + 112982 0.72 0.898959
Target:  5'- aUCCGCCGGAcUCcGuGACGGCggUg -3'
miRNA:   3'- gAGGUGGCCUuAGaCuCUGUCGuuGu -5'
29949 5' -52 NC_006273.1 + 56116 0.72 0.902796
Target:  5'- -gCCGCCGGAuuucGUCgaaacgggccgcgGAGGCGGCGACc -3'
miRNA:   3'- gaGGUGGCCU----UAGa------------CUCUGUCGUUGu -5'
29949 5' -52 NC_006273.1 + 4925 0.7 0.943067
Target:  5'- -cCCGCCGGGGcuUCUgGAGaacgccggaGCAGCAGCGa -3'
miRNA:   3'- gaGGUGGCCUU--AGA-CUC---------UGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 118069 0.7 0.947504
Target:  5'- uUCCGCgGGAAgaacGGACGGCGACGc -3'
miRNA:   3'- gAGGUGgCCUUagacUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 162351 0.7 0.954901
Target:  5'- gUCUGCCGGugguggugGAGGCGGCGGCGc -3'
miRNA:   3'- gAGGUGGCCuuaga---CUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 135212 0.69 0.962598
Target:  5'- -gCCAcCCGGAcgugaacGUCgugGAGACaAGCAACAc -3'
miRNA:   3'- gaGGU-GGCCU-------UAGa--CUCUG-UCGUUGU- -5'
29949 5' -52 NC_006273.1 + 63706 0.69 0.96294
Target:  5'- --gCGCCGGcAGUCUGAGAaacuaucuGCGACAu -3'
miRNA:   3'- gagGUGGCC-UUAGACUCUgu------CGUUGU- -5'
29949 5' -52 NC_006273.1 + 151989 0.69 0.969329
Target:  5'- -gCCGCCGGGccGggUGGcGGCGGCAGCAg -3'
miRNA:   3'- gaGGUGGCCU--UagACU-CUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 71461 0.68 0.979679
Target:  5'- --aCGCCGcGAUC-GAGGCGGCGGCGa -3'
miRNA:   3'- gagGUGGCcUUAGaCUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 165916 0.68 0.979679
Target:  5'- -gCCACgGGGGgaaUGAGACAGaCGACu -3'
miRNA:   3'- gaGGUGgCCUUag-ACUCUGUC-GUUGu -5'
29949 5' -52 NC_006273.1 + 112083 0.68 0.981802
Target:  5'- uUCUguuCUGGAcuAUCUGGGACGGCGuCAg -3'
miRNA:   3'- gAGGu--GGCCU--UAGACUCUGUCGUuGU- -5'
29949 5' -52 NC_006273.1 + 192057 0.68 0.982004
Target:  5'- uCUUCAUCGGAGUCUGucugguggcccugauGuacuuuacGCAGCAGCAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACu--------------C--------UGUCGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.