Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29949 | 5' | -52 | NC_006273.1 | + | 48035 | 0.68 | 0.983753 |
Target: 5'- cCUCCGCCGGAcau---GGCGGUGACGg -3' miRNA: 3'- -GAGGUGGCCUuagacuCUGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 84548 | 0.68 | 0.983753 |
Target: 5'- aCUgaACCGG-AUCgaGAGugAGCAGCAg -3' miRNA: 3'- -GAggUGGCCuUAGa-CUCugUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 92993 | 0.68 | 0.985542 |
Target: 5'- cCUCC-CCGGAAcuaccgCUGAG-CGGCuGCGg -3' miRNA: 3'- -GAGGuGGCCUUa-----GACUCuGUCGuUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 119718 | 0.68 | 0.985542 |
Target: 5'- aUCCAgCGGAGUCgacacGAGACGGgCAu-- -3' miRNA: 3'- gAGGUgGCCUUAGa----CUCUGUC-GUugu -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 10249 | 0.68 | 0.985542 |
Target: 5'- --gCACCGaGAGaCUGAGGCAGCGu-- -3' miRNA: 3'- gagGUGGC-CUUaGACUCUGUCGUugu -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 188785 | 0.68 | 0.985542 |
Target: 5'- gCUCCGucggcgugCGGggUCgGGGACAGgGACAc -3' miRNA: 3'- -GAGGUg-------GCCuuAGaCUCUGUCgUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 195977 | 0.68 | 0.985542 |
Target: 5'- -gCCGCCGGGcgCcccuccGAGuaGCGGCAACAa -3' miRNA: 3'- gaGGUGGCCUuaGa-----CUC--UGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 1084 | 0.68 | 0.985542 |
Target: 5'- -gCCGCCGGGcgCcccuccGAGuaGCGGCAACAa -3' miRNA: 3'- gaGGUGGCCUuaGa-----CUC--UGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 46526 | 0.67 | 0.987176 |
Target: 5'- -gCCACCgcGGAAUCcGAGACuGCcGCGc -3' miRNA: 3'- gaGGUGG--CCUUAGaCUCUGuCGuUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 146483 | 0.67 | 0.988664 |
Target: 5'- uCUUCGCCGGAggCUGuGGcCAGCGc-- -3' miRNA: 3'- -GAGGUGGCCUuaGACuCU-GUCGUugu -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 162810 | 0.67 | 0.988664 |
Target: 5'- -gCCGCUGGAcacGUCUGAaGCGGUGGCc -3' miRNA: 3'- gaGGUGGCCU---UAGACUcUGUCGUUGu -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 106613 | 0.67 | 0.988664 |
Target: 5'- aUCCACUuguagGGAAcUUUGAG-CGGCGACGg -3' miRNA: 3'- gAGGUGG-----CCUU-AGACUCuGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 151171 | 0.67 | 0.990015 |
Target: 5'- aUCCACaccacuuAUCUGcuGGGCAGCAACAc -3' miRNA: 3'- gAGGUGgccu---UAGAC--UCUGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 134932 | 0.67 | 0.990015 |
Target: 5'- -aCCACCaGGAcggCUGGGGCGaccauuGCAGCAc -3' miRNA: 3'- gaGGUGG-CCUua-GACUCUGU------CGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 113732 | 0.67 | 0.990015 |
Target: 5'- --gCGCCGGAGg-UGGcGACGGCGGCGg -3' miRNA: 3'- gagGUGGCCUUagACU-CUGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 16033 | 0.67 | 0.991236 |
Target: 5'- --gCGCaCGGugguuucgCUGGGACGGCAACGa -3' miRNA: 3'- gagGUG-GCCuua-----GACUCUGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 203718 | 0.67 | 0.992336 |
Target: 5'- gCUCUgcaGCUGGug-CUgGAGAUAGCAGCGc -3' miRNA: 3'- -GAGG---UGGCCuuaGA-CUCUGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 33272 | 0.67 | 0.992336 |
Target: 5'- uUCCAgCGGGGccUUGcGGCGGCAGCGg -3' miRNA: 3'- gAGGUgGCCUUa-GACuCUGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 8072 | 0.67 | 0.992336 |
Target: 5'- aUCCACCuuGGAAg-UG-GACGGCGAUAa -3' miRNA: 3'- gAGGUGG--CCUUagACuCUGUCGUUGU- -5' |
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29949 | 5' | -52 | NC_006273.1 | + | 101912 | 0.66 | 0.993038 |
Target: 5'- uCUCUugCGGGuugcggugcguguagUUGAGACAGCGAa- -3' miRNA: 3'- -GAGGugGCCUua-------------GACUCUGUCGUUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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