miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29949 5' -52 NC_006273.1 + 101912 0.66 0.993038
Target:  5'- uCUCUugCGGGuugcggugcguguagUUGAGACAGCGAa- -3'
miRNA:   3'- -GAGGugGCCUua-------------GACUCUGUCGUUgu -5'
29949 5' -52 NC_006273.1 + 102101 0.66 0.993323
Target:  5'- -aCCGCCGcuugCgcccGAGACGGCGGCAu -3'
miRNA:   3'- gaGGUGGCcuuaGa---CUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 105407 0.66 0.996305
Target:  5'- -gCCGCCGG--UC-GAGcccguGCAGCAGCAg -3'
miRNA:   3'- gaGGUGGCCuuAGaCUC-----UGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 105874 0.66 0.995689
Target:  5'- gUCUACCGGcgaggguGUCcGuuGCAGCAACGc -3'
miRNA:   3'- gAGGUGGCCu------UAGaCucUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 106613 0.67 0.988664
Target:  5'- aUCCACUuguagGGAAcUUUGAG-CGGCGACGg -3'
miRNA:   3'- gAGGUGG-----CCUU-AGACUCuGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 111789 0.76 0.700637
Target:  5'- -aCCGCCGGAcUCUGGGuCAcGCGGCAu -3'
miRNA:   3'- gaGGUGGCCUuAGACUCuGU-CGUUGU- -5'
29949 5' -52 NC_006273.1 + 112083 0.68 0.981802
Target:  5'- uUCUguuCUGGAcuAUCUGGGACGGCGuCAg -3'
miRNA:   3'- gAGGu--GGCCU--UAGACUCUGUCGUuGU- -5'
29949 5' -52 NC_006273.1 + 112982 0.72 0.898959
Target:  5'- aUCCGCCGGAcUCcGuGACGGCggUg -3'
miRNA:   3'- gAGGUGGCCUuAGaCuCUGUCGuuGu -5'
29949 5' -52 NC_006273.1 + 113732 0.67 0.990015
Target:  5'- --gCGCCGGAGg-UGGcGACGGCGGCGg -3'
miRNA:   3'- gagGUGGCCUUagACU-CUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 118069 0.7 0.947504
Target:  5'- uUCCGCgGGAAgaacGGACGGCGACGc -3'
miRNA:   3'- gAGGUGgCCUUagacUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 118326 0.78 0.598396
Target:  5'- -aCCGCguCGGGuUCUGAGGCGGCAACGg -3'
miRNA:   3'- gaGGUG--GCCUuAGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 119718 0.68 0.985542
Target:  5'- aUCCAgCGGAGUCgacacGAGACGGgCAu-- -3'
miRNA:   3'- gAGGUgGCCUUAGa----CUCUGUC-GUugu -5'
29949 5' -52 NC_006273.1 + 134932 0.67 0.990015
Target:  5'- -aCCACCaGGAcggCUGGGGCGaccauuGCAGCAc -3'
miRNA:   3'- gaGGUGG-CCUua-GACUCUGU------CGUUGU- -5'
29949 5' -52 NC_006273.1 + 135212 0.69 0.962598
Target:  5'- -gCCAcCCGGAcgugaacGUCgugGAGACaAGCAACAc -3'
miRNA:   3'- gaGGU-GGCCU-------UAGa--CUCUG-UCGUUGU- -5'
29949 5' -52 NC_006273.1 + 135418 0.66 0.996305
Target:  5'- -aCCugUGuGAUCUG-GGCAGCGGCu -3'
miRNA:   3'- gaGGugGCcUUAGACuCUGUCGUUGu -5'
29949 5' -52 NC_006273.1 + 136819 0.66 0.993323
Target:  5'- uCUCCGCgaGG--UCUGGGAUGuGCAGCAu -3'
miRNA:   3'- -GAGGUGg-CCuuAGACUCUGU-CGUUGU- -5'
29949 5' -52 NC_006273.1 + 146483 0.67 0.988664
Target:  5'- uCUUCGCCGGAggCUGuGGcCAGCGc-- -3'
miRNA:   3'- -GAGGUGGCCUuaGACuCU-GUCGUugu -5'
29949 5' -52 NC_006273.1 + 150769 0.73 0.863792
Target:  5'- -gCCGCCGGGcgCUGuGguGCAGCAGCc -3'
miRNA:   3'- gaGGUGGCCUuaGACuC--UGUCGUUGu -5'
29949 5' -52 NC_006273.1 + 151171 0.67 0.990015
Target:  5'- aUCCACaccacuuAUCUGcuGGGCAGCAACAc -3'
miRNA:   3'- gAGGUGgccu---UAGAC--UCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 151989 0.69 0.969329
Target:  5'- -gCCGCCGGGccGggUGGcGGCGGCAGCAg -3'
miRNA:   3'- gaGGUGGCCU--UagACU-CUGUCGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.