miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29949 5' -52 NC_006273.1 + 234239 1.09 0.009857
Target:  5'- gCUCCACCGGAAUCUGAGACAGCAACAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 233723 0.74 0.814759
Target:  5'- --gCGCCGG---CUGAGGCAGCAGCGu -3'
miRNA:   3'- gagGUGGCCuuaGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 214112 0.74 0.796996
Target:  5'- -aCCACCGGAggcgcAUC-GAGACAGCAGu- -3'
miRNA:   3'- gaGGUGGCCU-----UAGaCUCUGUCGUUgu -5'
29949 5' -52 NC_006273.1 + 204632 0.66 0.996305
Target:  5'- -gCCGCCGGcgccguUCUcGGGCAGCGAgGg -3'
miRNA:   3'- gaGGUGGCCuu----AGAcUCUGUCGUUgU- -5'
29949 5' -52 NC_006273.1 + 203718 0.67 0.992336
Target:  5'- gCUCUgcaGCUGGug-CUgGAGAUAGCAGCGc -3'
miRNA:   3'- -GAGG---UGGCCuuaGA-CUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 195977 0.68 0.985542
Target:  5'- -gCCGCCGGGcgCcccuccGAGuaGCGGCAACAa -3'
miRNA:   3'- gaGGUGGCCUuaGa-----CUC--UGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 192057 0.68 0.982004
Target:  5'- uCUUCAUCGGAGUCUGucugguggcccugauGuacuuuacGCAGCAGCAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACu--------------C--------UGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 188785 0.68 0.985542
Target:  5'- gCUCCGucggcgugCGGggUCgGGGACAGgGACAc -3'
miRNA:   3'- -GAGGUg-------GCCuuAGaCUCUGUCgUUGU- -5'
29949 5' -52 NC_006273.1 + 165916 0.68 0.979679
Target:  5'- -gCCACgGGGGgaaUGAGACAGaCGACu -3'
miRNA:   3'- gaGGUGgCCUUag-ACUCUGUC-GUUGu -5'
29949 5' -52 NC_006273.1 + 163064 0.66 0.993323
Target:  5'- ---uGCaGGAGUCcGAGGCGGCGGCGa -3'
miRNA:   3'- gaggUGgCCUUAGaCUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 162810 0.67 0.988664
Target:  5'- -gCCGCUGGAcacGUCUGAaGCGGUGGCc -3'
miRNA:   3'- gaGGUGGCCU---UAGACUcUGUCGUUGu -5'
29949 5' -52 NC_006273.1 + 162351 0.7 0.954901
Target:  5'- gUCUGCCGGugguggugGAGGCGGCGGCGc -3'
miRNA:   3'- gAGGUGGCCuuaga---CUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 151989 0.69 0.969329
Target:  5'- -gCCGCCGGGccGggUGGcGGCGGCAGCAg -3'
miRNA:   3'- gaGGUGGCCU--UagACU-CUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 151171 0.67 0.990015
Target:  5'- aUCCACaccacuuAUCUGcuGGGCAGCAACAc -3'
miRNA:   3'- gAGGUGgccu---UAGAC--UCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 150769 0.73 0.863792
Target:  5'- -gCCGCCGGGcgCUGuGguGCAGCAGCc -3'
miRNA:   3'- gaGGUGGCCUuaGACuC--UGUCGUUGu -5'
29949 5' -52 NC_006273.1 + 146483 0.67 0.988664
Target:  5'- uCUUCGCCGGAggCUGuGGcCAGCGc-- -3'
miRNA:   3'- -GAGGUGGCCUuaGACuCU-GUCGUugu -5'
29949 5' -52 NC_006273.1 + 136819 0.66 0.993323
Target:  5'- uCUCCGCgaGG--UCUGGGAUGuGCAGCAu -3'
miRNA:   3'- -GAGGUGg-CCuuAGACUCUGU-CGUUGU- -5'
29949 5' -52 NC_006273.1 + 135418 0.66 0.996305
Target:  5'- -aCCugUGuGAUCUG-GGCAGCGGCu -3'
miRNA:   3'- gaGGugGCcUUAGACuCUGUCGUUGu -5'
29949 5' -52 NC_006273.1 + 135212 0.69 0.962598
Target:  5'- -gCCAcCCGGAcgugaacGUCgugGAGACaAGCAACAc -3'
miRNA:   3'- gaGGU-GGCCU-------UAGa--CUCUG-UCGUUGU- -5'
29949 5' -52 NC_006273.1 + 134932 0.67 0.990015
Target:  5'- -aCCACCaGGAcggCUGGGGCGaccauuGCAGCAc -3'
miRNA:   3'- gaGGUGG-CCUua-GACUCUGU------CGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.