miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29949 5' -52 NC_006273.1 + 39346 1.09 0.009857
Target:  5'- gCUCCACCGGAAUCUGAGACAGCAACAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 134932 0.67 0.990015
Target:  5'- -aCCACCaGGAcggCUGGGGCGaccauuGCAGCAc -3'
miRNA:   3'- gaGGUGG-CCUua-GACUCUGU------CGUUGU- -5'
29949 5' -52 NC_006273.1 + 10249 0.68 0.985542
Target:  5'- --gCACCGaGAGaCUGAGGCAGCGu-- -3'
miRNA:   3'- gagGUGGC-CUUaGACUCUGUCGUugu -5'
29949 5' -52 NC_006273.1 + 1084 0.68 0.985542
Target:  5'- -gCCGCCGGGcgCcccuccGAGuaGCGGCAACAa -3'
miRNA:   3'- gaGGUGGCCUuaGa-----CUC--UGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 48035 0.68 0.983753
Target:  5'- cCUCCGCCGGAcau---GGCGGUGACGg -3'
miRNA:   3'- -GAGGUGGCCUuagacuCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 71461 0.68 0.979679
Target:  5'- --aCGCCGcGAUC-GAGGCGGCGGCGa -3'
miRNA:   3'- gagGUGGCcUUAGaCUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 204632 0.66 0.996305
Target:  5'- -gCCGCCGGcgccguUCUcGGGCAGCGAgGg -3'
miRNA:   3'- gaGGUGGCCuu----AGAcUCUGUCGUUgU- -5'
29949 5' -52 NC_006273.1 + 102101 0.66 0.993323
Target:  5'- -aCCGCCGcuugCgcccGAGACGGCGGCAu -3'
miRNA:   3'- gaGGUGGCcuuaGa---CUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 203718 0.67 0.992336
Target:  5'- gCUCUgcaGCUGGug-CUgGAGAUAGCAGCGc -3'
miRNA:   3'- -GAGG---UGGCCuuaGA-CUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 46526 0.67 0.987176
Target:  5'- -gCCACCgcGGAAUCcGAGACuGCcGCGc -3'
miRNA:   3'- gaGGUGG--CCUUAGaCUCUGuCGuUGU- -5'
29949 5' -52 NC_006273.1 + 92993 0.68 0.985542
Target:  5'- cCUCC-CCGGAAcuaccgCUGAG-CGGCuGCGg -3'
miRNA:   3'- -GAGGuGGCCUUa-----GACUCuGUCGuUGU- -5'
29949 5' -52 NC_006273.1 + 214112 0.74 0.796996
Target:  5'- -aCCACCGGAggcgcAUC-GAGACAGCAGu- -3'
miRNA:   3'- gaGGUGGCCU-----UAGaCUCUGUCGUUgu -5'
29949 5' -52 NC_006273.1 + 8072 0.67 0.992336
Target:  5'- aUCCACCuuGGAAg-UG-GACGGCGAUAa -3'
miRNA:   3'- gAGGUGG--CCUUagACuCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 38831 0.74 0.814759
Target:  5'- --gCGCCGG---CUGAGGCAGCAGCGu -3'
miRNA:   3'- gagGUGGCCuuaGACUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 119718 0.68 0.985542
Target:  5'- aUCCAgCGGAGUCgacacGAGACGGgCAu-- -3'
miRNA:   3'- gAGGUgGCCUUAGa----CUCUGUC-GUugu -5'
29949 5' -52 NC_006273.1 + 99728 0.66 0.993323
Target:  5'- cCUCCACCuGcuuUUUGAGGCGGUcGCGc -3'
miRNA:   3'- -GAGGUGGcCuu-AGACUCUGUCGuUGU- -5'
29949 5' -52 NC_006273.1 + 118069 0.7 0.947504
Target:  5'- uUCCGCgGGAAgaacGGACGGCGACGc -3'
miRNA:   3'- gAGGUGgCCUUagacUCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 151171 0.67 0.990015
Target:  5'- aUCCACaccacuuAUCUGcuGGGCAGCAACAc -3'
miRNA:   3'- gAGGUGgccu---UAGAC--UCUGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 192057 0.68 0.982004
Target:  5'- uCUUCAUCGGAGUCUGucugguggcccugauGuacuuuacGCAGCAGCAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACu--------------C--------UGUCGUUGU- -5'
29949 5' -52 NC_006273.1 + 112083 0.68 0.981802
Target:  5'- uUCUguuCUGGAcuAUCUGGGACGGCGuCAg -3'
miRNA:   3'- gAGGu--GGCCU--UAGACUCUGUCGUuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.