miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 184547 0.65 0.916608
Target:  5'- --cCGGACAUGCGGGuuuccagcaaucCUCGGCGUCg -3'
miRNA:   3'- ucuGCUUGUGCGCCUu-----------GGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 100296 0.65 0.916064
Target:  5'- gAGACGGccACGCGCGaGAaggagcacacguagGCCaUGGCGCg- -3'
miRNA:   3'- -UCUGCU--UGUGCGC-CU--------------UGG-GCCGCGgg -5'
29950 5' -58.8 NC_006273.1 + 94104 0.65 0.91715
Target:  5'- uGGGCGGccGCACcuagggaGCGcGAGCCCcGUGCCg -3'
miRNA:   3'- -UCUGCU--UGUG-------CGC-CUUGGGcCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 39185 0.66 0.900581
Target:  5'- --cCGAGCGgcguUGCGGggUUggaggagaCGGCGCCCu -3'
miRNA:   3'- ucuGCUUGU----GCGCCuuGG--------GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 167432 0.66 0.900581
Target:  5'- uGGCGGGCGCGCu---CUCGGCGgUCa -3'
miRNA:   3'- uCUGCUUGUGCGccuuGGGCCGCgGG- -5'
29950 5' -58.8 NC_006273.1 + 208805 0.66 0.894463
Target:  5'- cGAUGGGCGCuGUGGcgcacagguugAGCCCGGCGgUg -3'
miRNA:   3'- uCUGCUUGUG-CGCC-----------UUGGGCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 204720 0.66 0.900581
Target:  5'- cGGCcGGC-CGCaGGAagccGCCCGGCGCg- -3'
miRNA:   3'- uCUGcUUGuGCG-CCU----UGGGCCGCGgg -5'
29950 5' -58.8 NC_006273.1 + 78515 0.66 0.900581
Target:  5'- cGGCGc-CGCcCGGAcACCgGGCGCCg -3'
miRNA:   3'- uCUGCuuGUGcGCCU-UGGgCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 35783 0.66 0.900581
Target:  5'- uGACGAggccgauaaaguACAaGCGGccAGCCUGGCGCa- -3'
miRNA:   3'- uCUGCU------------UGUgCGCC--UUGGGCCGCGgg -5'
29950 5' -58.8 NC_006273.1 + 153313 0.66 0.912197
Target:  5'- cGGACGGacugGCACGCaGGACaaGGgacagaaGCCCa -3'
miRNA:   3'- -UCUGCU----UGUGCGcCUUGggCCg------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 232855 0.66 0.902971
Target:  5'- cGGACGuAGCAaaaaagcuaacugccCGUGcGGCUCGcGCGCCCa -3'
miRNA:   3'- -UCUGC-UUGU---------------GCGCcUUGGGC-CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 146663 0.66 0.894463
Target:  5'- uAGAUGAgGC-CGCaGAGuCCaaagaaGGCGCCCa -3'
miRNA:   3'- -UCUGCU-UGuGCGcCUU-GGg-----CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 126762 0.66 0.888141
Target:  5'- uGACGcuGCGCGUGGu-CCagaGGCGCgCg -3'
miRNA:   3'- uCUGCu-UGUGCGCCuuGGg--CCGCGgG- -5'
29950 5' -58.8 NC_006273.1 + 103281 0.66 0.89384
Target:  5'- uAGACGGGCA-GCGGucGCUccagcagCGGUGCCa -3'
miRNA:   3'- -UCUGCUUGUgCGCCu-UGG-------GCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 29868 0.66 0.900581
Target:  5'- gAGAUGAggcACACaGCGGucuucuucugcuGAUCCGGCgacaacacGCCCu -3'
miRNA:   3'- -UCUGCU---UGUG-CGCC------------UUGGGCCG--------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 144393 0.66 0.900581
Target:  5'- gAGGCcuuCGucaGCGGcugucuGCCCGGCGCCg -3'
miRNA:   3'- -UCUGcuuGUg--CGCCu-----UGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 194861 0.66 0.888141
Target:  5'- cGGCgGAGCGCuuGCGGcGCCauaaaGGCGCUUa -3'
miRNA:   3'- uCUG-CUUGUG--CGCCuUGGg----CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 232744 0.66 0.900581
Target:  5'- cAGAgcuUGAGCgucgGCGCGGcgUCUGGCGUCUu -3'
miRNA:   3'- -UCU---GCUUG----UGCGCCuuGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 56149 0.66 0.900581
Target:  5'- cGGCGAcCgACGCGGAGgucgUCCGaaCGCCCu -3'
miRNA:   3'- uCUGCUuG-UGCGCCUU----GGGCc-GCGGG- -5'
29950 5' -58.8 NC_006273.1 + 54960 0.66 0.900581
Target:  5'- cGGCGGugGCGUGGAAaCCGuCGUCg -3'
miRNA:   3'- uCUGCUugUGCGCCUUgGGCcGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.