miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 126762 0.66 0.888141
Target:  5'- uGACGcuGCGCGUGGu-CCagaGGCGCgCg -3'
miRNA:   3'- uCUGCu-UGUGCGCCuuGGg--CCGCGgG- -5'
29950 5' -58.8 NC_006273.1 + 54960 0.66 0.900581
Target:  5'- cGGCGGugGCGUGGAAaCCGuCGUCg -3'
miRNA:   3'- uCUGCUugUGCGCCUUgGGCcGCGGg -5'
29950 5' -58.8 NC_006273.1 + 190072 0.66 0.906493
Target:  5'- gGGACGAACAC-CG----UCGGCGCCg -3'
miRNA:   3'- -UCUGCUUGUGcGCcuugGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 212867 0.66 0.912197
Target:  5'- gAGAUGAGCAaaauugguggugUGUGGGcgaaACUCGGCGaaaCCg -3'
miRNA:   3'- -UCUGCUUGU------------GCGCCU----UGGGCCGCg--GG- -5'
29950 5' -58.8 NC_006273.1 + 76633 0.66 0.912197
Target:  5'- cGACGGcgcACugGCGcGAcccgACCCGGUauuuuGCCa -3'
miRNA:   3'- uCUGCU---UGugCGC-CU----UGGGCCG-----CGGg -5'
29950 5' -58.8 NC_006273.1 + 218286 0.66 0.904741
Target:  5'- cGACGGcguuccgcgaagucGC-CGCGG-ACCaCGcGCGCCUg -3'
miRNA:   3'- uCUGCU--------------UGuGCGCCuUGG-GC-CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 146204 0.66 0.887498
Target:  5'- uAGGCuguACGCGCaGGGcacguacGCCgUGGUGCCCa -3'
miRNA:   3'- -UCUGcu-UGUGCG-CCU-------UGG-GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 153313 0.66 0.912197
Target:  5'- cGGACGGacugGCACGCaGGACaaGGgacagaaGCCCa -3'
miRNA:   3'- -UCUGCU----UGUGCGcCUUGggCCg------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 125242 0.66 0.904741
Target:  5'- gAGACGAACaacgucugcaccggGCGCGGcgucagagcgAGCgUGGCGCguCCg -3'
miRNA:   3'- -UCUGCUUG--------------UGCGCC----------UUGgGCCGCG--GG- -5'
29950 5' -58.8 NC_006273.1 + 167432 0.66 0.900581
Target:  5'- uGGCGGGCGCGCu---CUCGGCGgUCa -3'
miRNA:   3'- uCUGCUUGUGCGccuuGGGCCGCgGG- -5'
29950 5' -58.8 NC_006273.1 + 232855 0.66 0.902971
Target:  5'- cGGACGuAGCAaaaaagcuaacugccCGUGcGGCUCGcGCGCCCa -3'
miRNA:   3'- -UCUGC-UUGU---------------GCGCcUUGGGC-CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 195878 0.66 0.886206
Target:  5'- --cCGAG-ACGCGGugacagaaggagguGGCCaCGGUGCCCa -3'
miRNA:   3'- ucuGCUUgUGCGCC--------------UUGG-GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 208805 0.66 0.894463
Target:  5'- cGAUGGGCGCuGUGGcgcacagguugAGCCCGGCGgUg -3'
miRNA:   3'- uCUGCUUGUG-CGCC-----------UUGGGCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 141855 0.66 0.914419
Target:  5'- aAGACGAGguCGUGGAucugaugaccgacgaGgCCGGCGgCg -3'
miRNA:   3'- -UCUGCUUguGCGCCU---------------UgGGCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 74486 0.66 0.905911
Target:  5'- cGACGccAC-CGCcGAuuuauuuACCCGGCGCCg -3'
miRNA:   3'- uCUGCu-UGuGCGcCU-------UGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 78515 0.66 0.900581
Target:  5'- cGGCGc-CGCcCGGAcACCgGGCGCCg -3'
miRNA:   3'- uCUGCuuGUGcGCCU-UGGgCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 232744 0.66 0.900581
Target:  5'- cAGAgcuUGAGCgucgGCGCGGcgUCUGGCGUCUu -3'
miRNA:   3'- -UCU---GCUUG----UGCGCCuuGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 144393 0.66 0.900581
Target:  5'- gAGGCcuuCGucaGCGGcugucuGCCCGGCGCCg -3'
miRNA:   3'- -UCUGcuuGUg--CGCCu-----UGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 39357 0.66 0.912197
Target:  5'- uGGACGAcgACGagGCGGcgcuACCCGGCGa-- -3'
miRNA:   3'- -UCUGCU--UGUg-CGCCu---UGGGCCGCggg -5'
29950 5' -58.8 NC_006273.1 + 210776 0.66 0.912755
Target:  5'- -cACGAAgaGCGCGGAggccacaggcACCaggaggagcaccucgGGCGCCCa -3'
miRNA:   3'- ucUGCUUg-UGCGCCU----------UGGg--------------CCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.