miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 233869 1.12 0.002052
Target:  5'- uAGACGAACACGCGGAACCCGGCGCCCa -3'
miRNA:   3'- -UCUGCUUGUGCGCCUUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 38976 1.12 0.002052
Target:  5'- uAGACGAACACGCGGAACCCGGCGCCCa -3'
miRNA:   3'- -UCUGCUUGUGCGCCUUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 43441 0.84 0.140294
Target:  5'- gAGGCGGAUACGCGGuuuucACCCGGgCGCCg -3'
miRNA:   3'- -UCUGCUUGUGCGCCu----UGGGCC-GCGGg -5'
29950 5' -58.8 NC_006273.1 + 213114 0.82 0.177946
Target:  5'- cAGAUGAGCGCaccgacgGCGGAGCcgcgucgcucgCCGGCGCCCg -3'
miRNA:   3'- -UCUGCUUGUG-------CGCCUUG-----------GGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 141051 0.82 0.178369
Target:  5'- gGGACGGGCcCGCGGAcggaCCGGCGCCg -3'
miRNA:   3'- -UCUGCUUGuGCGCCUug--GGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 71092 0.79 0.252554
Target:  5'- gAGAUGAACuuguggcCGUGGcACCCGGCGCCg -3'
miRNA:   3'- -UCUGCUUGu------GCGCCuUGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 160547 0.79 0.276221
Target:  5'- cGACGAGgACGCGGAGCCC-GCGgCUg -3'
miRNA:   3'- uCUGCUUgUGCGCCUUGGGcCGCgGG- -5'
29950 5' -58.8 NC_006273.1 + 197192 0.78 0.321151
Target:  5'- cGGAUGAGCggccgcgGCGCGG-GCUCGGCGUCCc -3'
miRNA:   3'- -UCUGCUUG-------UGCGCCuUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 20571 0.77 0.365244
Target:  5'- uGGCGucGCACGUGGGuuccgggacagaACCCGGCGgCCg -3'
miRNA:   3'- uCUGCu-UGUGCGCCU------------UGGGCCGCgGG- -5'
29950 5' -58.8 NC_006273.1 + 135693 0.77 0.368278
Target:  5'- aAGACG-AC-CGCGGucccucccaguccCCCGGCGCCCu -3'
miRNA:   3'- -UCUGCuUGuGCGCCuu-----------GGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 174824 0.76 0.380583
Target:  5'- cGGACGAGgAacaGCGGGuguCCuCGGUGCCCg -3'
miRNA:   3'- -UCUGCUUgUg--CGCCUu--GG-GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 164268 0.76 0.411707
Target:  5'- gAGGCGAaacugguGCugGCGGcGCCgGGUGCCa -3'
miRNA:   3'- -UCUGCU-------UGugCGCCuUGGgCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 137202 0.75 0.437541
Target:  5'- -aGCGAGCucgucgccaGCGCGaGcGCUCGGCGCCCa -3'
miRNA:   3'- ucUGCUUG---------UGCGC-CuUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 197494 0.75 0.446072
Target:  5'- -uGCGAGaccuGCGCGaGGCCCGGCGCCa -3'
miRNA:   3'- ucUGCUUg---UGCGCcUUGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 47216 0.75 0.460783
Target:  5'- cGGCGAGCcauggaugugcccgACcCGGAACUCGGCGaCCCg -3'
miRNA:   3'- uCUGCUUG--------------UGcGCCUUGGGCCGC-GGG- -5'
29950 5' -58.8 NC_006273.1 + 156705 0.74 0.472204
Target:  5'- cGGCGGuGCcCGCGGAcCCCGGC-CCCu -3'
miRNA:   3'- uCUGCU-UGuGCGCCUuGGGCCGcGGG- -5'
29950 5' -58.8 NC_006273.1 + 70686 0.74 0.478412
Target:  5'- cGGugGAggGCGCGCGGcAacucgagaugguguACCCGGCaCCCg -3'
miRNA:   3'- -UCugCU--UGUGCGCC-U--------------UGGGCCGcGGG- -5'
29950 5' -58.8 NC_006273.1 + 34994 0.74 0.481086
Target:  5'- gAGugGAACAUcgGUGGGuACCCGGUGUCg -3'
miRNA:   3'- -UCugCUUGUG--CGCCU-UGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 110098 0.74 0.490048
Target:  5'- uAGACGcaaACGCGG-GCCCGGaCGCgCCa -3'
miRNA:   3'- -UCUGCuugUGCGCCuUGGGCC-GCG-GG- -5'
29950 5' -58.8 NC_006273.1 + 76557 0.74 0.5082
Target:  5'- aGGACGuGGCGCGCuGuGGACUCGaaGCGCCCa -3'
miRNA:   3'- -UCUGC-UUGUGCG-C-CUUGGGC--CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.