Results 21 - 40 of 283 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29950 | 5' | -58.8 | NC_006273.1 | + | 174441 | 0.73 | 0.517383 |
Target: 5'- cGACGuuGCACGCGGAaaguucGCCCGcgaGCGCUg -3' miRNA: 3'- uCUGCu-UGUGCGCCU------UGGGC---CGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 115270 | 0.73 | 0.53594 |
Target: 5'- uGGugGAGCACGCGGAagGCauGGCuUCCg -3' miRNA: 3'- -UCugCUUGUGCGCCU--UGggCCGcGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 167183 | 0.73 | 0.544367 |
Target: 5'- cGGCGGGCGCagcggccGCGGAGgCCGGCGUa- -3' miRNA: 3'- uCUGCUUGUG-------CGCCUUgGGCCGCGgg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 2378 | 0.73 | 0.545306 |
Target: 5'- uGGGCGcGCugGCgcuGGGGCgcgagUCGGCGCCCg -3' miRNA: 3'- -UCUGCuUGugCG---CCUUG-----GGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 197271 | 0.73 | 0.545306 |
Target: 5'- uGGGCGcGCugGCgcuGGGGCgcgagUCGGCGCCCg -3' miRNA: 3'- -UCUGCuUGugCG---CCUUG-----GGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 224487 | 0.73 | 0.551893 |
Target: 5'- --uUGAACACcaaagucaacauuuGCGGcuACCUGGCGCCCa -3' miRNA: 3'- ucuGCUUGUG--------------CGCCu-UGGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 210713 | 0.73 | 0.564189 |
Target: 5'- cGGACGAcgGCAgCGCGGGugCCGGUuucGCUg -3' miRNA: 3'- -UCUGCU--UGU-GCGCCUugGGCCG---CGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 30488 | 0.73 | 0.564189 |
Target: 5'- -cACGAGCACGCGGGcGCgCaGCGCCa -3' miRNA: 3'- ucUGCUUGUGCGCCU-UGgGcCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 218718 | 0.73 | 0.564189 |
Target: 5'- -cACcGGCGCGguaGGAGCCCacGGCGCCCa -3' miRNA: 3'- ucUGcUUGUGCg--CCUUGGG--CCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 45949 | 0.72 | 0.573697 |
Target: 5'- cGACGAGCucCGUcacaGcGACCCGGCGCCg -3' miRNA: 3'- uCUGCUUGu-GCG----CcUUGGGCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 233519 | 0.72 | 0.573697 |
Target: 5'- cGACGcacggccguagcAGCgACGCGGggUgCGGCGCCg -3' miRNA: 3'- uCUGC------------UUG-UGCGCCuuGgGCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 38626 | 0.72 | 0.582286 |
Target: 5'- cGACGcacggccgucagcAGCgACGCGGggUgCGGCGCCg -3' miRNA: 3'- uCUGC-------------UUG-UGCGCCuuGgGCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 195965 | 0.72 | 0.583241 |
Target: 5'- ---aGAACccCGCGGGccGCCgGGCGCCCc -3' miRNA: 3'- ucugCUUGu-GCGCCU--UGGgCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 1072 | 0.72 | 0.583241 |
Target: 5'- ---aGAACccCGCGGGccGCCgGGCGCCCc -3' miRNA: 3'- ucugCUUGu-GCGCCU--UGGgCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 1279 | 0.72 | 0.587068 |
Target: 5'- cGGCGGACACGgGGAACacagaCGGCacgcacacgcagcucGCCUa -3' miRNA: 3'- uCUGCUUGUGCgCCUUGg----GCCG---------------CGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 221028 | 0.72 | 0.592817 |
Target: 5'- cAGGC-AGCGCGgGGAGCuCCGGCGgCa -3' miRNA: 3'- -UCUGcUUGUGCgCCUUG-GGCCGCgGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 202033 | 0.72 | 0.600496 |
Target: 5'- gGGACGcgccgcaggaucGCACGCGGcugccgcaguucAGCUCGGCGCUCu -3' miRNA: 3'- -UCUGCu-----------UGUGCGCC------------UUGGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 140994 | 0.72 | 0.602418 |
Target: 5'- cGGAgCGGGC-CGC---GCCCGGUGCCCg -3' miRNA: 3'- -UCU-GCUUGuGCGccuUGGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 140657 | 0.72 | 0.602418 |
Target: 5'- aAGGgGAGCugGgUGGGGgaucCCCGGuCGCCCa -3' miRNA: 3'- -UCUgCUUGugC-GCCUU----GGGCC-GCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 102175 | 0.72 | 0.602418 |
Target: 5'- uAGGCGAGCACcuCGGugaGACCgCGGCGUCg -3' miRNA: 3'- -UCUGCUUGUGc-GCC---UUGG-GCCGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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