miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 204423 0.66 0.906493
Target:  5'- -cGCGAcCACGCuGGGCUCGaaGCCCa -3'
miRNA:   3'- ucUGCUuGUGCGcCUUGGGCcgCGGG- -5'
29950 5' -58.8 NC_006273.1 + 74486 0.66 0.905911
Target:  5'- cGACGccAC-CGCcGAuuuauuuACCCGGCGCCg -3'
miRNA:   3'- uCUGCu-UGuGCGcCU-------UGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 38179 0.66 0.905911
Target:  5'- -aGCGggUACacgugcccguccaGCGGGcaguACCCgaacacGGCGCCCa -3'
miRNA:   3'- ucUGCuuGUG-------------CGCCU----UGGG------CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 233072 0.66 0.905911
Target:  5'- -aGCGggUACacgugcccguccaGCGGGcaguACCCgaacacGGCGCCCa -3'
miRNA:   3'- ucUGCuuGUG-------------CGCCU----UGGG------CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 125242 0.66 0.904741
Target:  5'- gAGACGAACaacgucugcaccggGCGCGGcgucagagcgAGCgUGGCGCguCCg -3'
miRNA:   3'- -UCUGCUUG--------------UGCGCC----------UUGgGCCGCG--GG- -5'
29950 5' -58.8 NC_006273.1 + 104515 0.66 0.904741
Target:  5'- cGGCGGccggguCGCGCGGcagugacagcuuguGACCCG-CGCUCg -3'
miRNA:   3'- uCUGCUu-----GUGCGCC--------------UUGGGCcGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 218286 0.66 0.904741
Target:  5'- cGACGGcguuccgcgaagucGC-CGCGG-ACCaCGcGCGCCUg -3'
miRNA:   3'- uCUGCU--------------UGuGCGCCuUGG-GC-CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 232855 0.66 0.902971
Target:  5'- cGGACGuAGCAaaaaagcuaacugccCGUGcGGCUCGcGCGCCCa -3'
miRNA:   3'- -UCUGC-UUGU---------------GCGCcUUGGGC-CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 54960 0.66 0.900581
Target:  5'- cGGCGGugGCGUGGAAaCCGuCGUCg -3'
miRNA:   3'- uCUGCUugUGCGCCUUgGGCcGCGGg -5'
29950 5' -58.8 NC_006273.1 + 35783 0.66 0.900581
Target:  5'- uGACGAggccgauaaaguACAaGCGGccAGCCUGGCGCa- -3'
miRNA:   3'- uCUGCU------------UGUgCGCC--UUGGGCCGCGgg -5'
29950 5' -58.8 NC_006273.1 + 39185 0.66 0.900581
Target:  5'- --cCGAGCGgcguUGCGGggUUggaggagaCGGCGCCCu -3'
miRNA:   3'- ucuGCUUGU----GCGCCuuGG--------GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 205264 0.66 0.900581
Target:  5'- -aGCGAuCugGCu-AGCCUGGCGCUCa -3'
miRNA:   3'- ucUGCUuGugCGccUUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 78515 0.66 0.900581
Target:  5'- cGGCGc-CGCcCGGAcACCgGGCGCCg -3'
miRNA:   3'- uCUGCuuGUGcGCCU-UGGgCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 29868 0.66 0.900581
Target:  5'- gAGAUGAggcACACaGCGGucuucuucugcuGAUCCGGCgacaacacGCCCu -3'
miRNA:   3'- -UCUGCU---UGUG-CGCC------------UUGGGCCG--------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 232744 0.66 0.900581
Target:  5'- cAGAgcuUGAGCgucgGCGCGGcgUCUGGCGUCUu -3'
miRNA:   3'- -UCU---GCUUG----UGCGCCuuGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 14006 0.66 0.900581
Target:  5'- gGGGCGGGCGCggggugGCGGAGCgggGaGCGCCg -3'
miRNA:   3'- -UCUGCUUGUG------CGCCUUGgg-C-CGCGGg -5'
29950 5' -58.8 NC_006273.1 + 212048 0.66 0.900581
Target:  5'- -cGCGAGgGuCGCGGGGgUgggGGCGCCCa -3'
miRNA:   3'- ucUGCUUgU-GCGCCUUgGg--CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 144393 0.66 0.900581
Target:  5'- gAGGCcuuCGucaGCGGcugucuGCCCGGCGCCg -3'
miRNA:   3'- -UCUGcuuGUg--CGCCu-----UGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 56149 0.66 0.900581
Target:  5'- cGGCGAcCgACGCGGAGgucgUCCGaaCGCCCu -3'
miRNA:   3'- uCUGCUuG-UGCGCCUU----GGGCc-GCGGG- -5'
29950 5' -58.8 NC_006273.1 + 205203 0.66 0.900581
Target:  5'- aAGACGGAgcguggugUGCGaCGGGccCCCGGgcuCGCCCa -3'
miRNA:   3'- -UCUGCUU--------GUGC-GCCUu-GGGCC---GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.