miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 39185 0.66 0.900581
Target:  5'- --cCGAGCGgcguUGCGGggUUggaggagaCGGCGCCCu -3'
miRNA:   3'- ucuGCUUGU----GCGCCuuGG--------GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 202355 0.66 0.900581
Target:  5'- uAGACGAuuuuaugcgccGCcaGCGCGGucgccACCUGGaucuGCCCu -3'
miRNA:   3'- -UCUGCU-----------UG--UGCGCCu----UGGGCCg---CGGG- -5'
29950 5' -58.8 NC_006273.1 + 232744 0.66 0.900581
Target:  5'- cAGAgcuUGAGCgucgGCGCGGcgUCUGGCGUCUu -3'
miRNA:   3'- -UCU---GCUUG----UGCGCCuuGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 230516 0.66 0.899979
Target:  5'- cGGACGGAUggggagaACgGCGGGACUUaGCcGCCCg -3'
miRNA:   3'- -UCUGCUUG-------UG-CGCCUUGGGcCG-CGGG- -5'
29950 5' -58.8 NC_006273.1 + 83378 0.66 0.898767
Target:  5'- -cGCGGGcCACGuCGGGcugcugccgccgccACCCggcccggcGGCGCCCg -3'
miRNA:   3'- ucUGCUU-GUGC-GCCU--------------UGGG--------CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 171050 0.66 0.896935
Target:  5'- cGGGCGu-CAUGCGGAGuCgCGGCGguuggggcgccgauuCCCa -3'
miRNA:   3'- -UCUGCuuGUGCGCCUU-GgGCCGC---------------GGG- -5'
29950 5' -58.8 NC_006273.1 + 208805 0.66 0.894463
Target:  5'- cGAUGGGCGCuGUGGcgcacagguugAGCCCGGCGgUg -3'
miRNA:   3'- uCUGCUUGUG-CGCC-----------UUGGGCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 147891 0.66 0.894463
Target:  5'- cGACauuCGCGuCGGcGCCCGGgcCGCCUg -3'
miRNA:   3'- uCUGcuuGUGC-GCCuUGGGCC--GCGGG- -5'
29950 5' -58.8 NC_006273.1 + 103994 0.66 0.894463
Target:  5'- gAGGCGu--GCGUGGGGaugaUGGUGCCCa -3'
miRNA:   3'- -UCUGCuugUGCGCCUUgg--GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 146663 0.66 0.894463
Target:  5'- uAGAUGAgGC-CGCaGAGuCCaaagaaGGCGCCCa -3'
miRNA:   3'- -UCUGCU-UGuGCGcCUU-GGg-----CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 103281 0.66 0.89384
Target:  5'- uAGACGGGCA-GCGGucGCUccagcagCGGUGCCa -3'
miRNA:   3'- -UCUGCUUGUgCGCCu-UGG-------GCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 186140 0.66 0.888141
Target:  5'- --uUGGGCGCGCuGGGCCacgaGGUGCCa -3'
miRNA:   3'- ucuGCUUGUGCGcCUUGGg---CCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 194861 0.66 0.888141
Target:  5'- cGGCgGAGCGCuuGCGGcGCCauaaaGGCGCUUa -3'
miRNA:   3'- uCUG-CUUGUG--CGCCuUGGg----CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 94677 0.66 0.888141
Target:  5'- cGGgGGGCuggguCGCGGAcCCCGGUuCCUa -3'
miRNA:   3'- uCUgCUUGu----GCGCCUuGGGCCGcGGG- -5'
29950 5' -58.8 NC_006273.1 + 126762 0.66 0.888141
Target:  5'- uGACGcuGCGCGUGGu-CCagaGGCGCgCg -3'
miRNA:   3'- uCUGCu-UGUGCGCCuuGGg--CCGCGgG- -5'
29950 5' -58.8 NC_006273.1 + 70834 0.66 0.888141
Target:  5'- cGGCacGCugGCGGGccgACCgCcGCGCCCu -3'
miRNA:   3'- uCUGcuUGugCGCCU---UGG-GcCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 183128 0.66 0.888141
Target:  5'- uGAUGAA-GCGCGGAGCCaGGCuGCg- -3'
miRNA:   3'- uCUGCUUgUGCGCCUUGGgCCG-CGgg -5'
29950 5' -58.8 NC_006273.1 + 234799 0.66 0.888141
Target:  5'- cGGCgGAGCGCuuGCGGcGCCauaaaGGCGCUUa -3'
miRNA:   3'- uCUG-CUUGUG--CGCCuUGGg----CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 37462 0.66 0.888141
Target:  5'- gGGuuCGGACGCGCacaacgGGAugACCUGGUGgCCu -3'
miRNA:   3'- -UCu-GCUUGUGCG------CCU--UGGGCCGCgGG- -5'
29950 5' -58.8 NC_006273.1 + 167148 0.66 0.888141
Target:  5'- aAGACGGGC-CGCuGGAAgUCGGCGg-- -3'
miRNA:   3'- -UCUGCUUGuGCG-CCUUgGGCCGCggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.