miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 960 0.67 0.860889
Target:  5'- --uCGGGCGUGCuGGGCgCCGGCGCCg -3'
miRNA:   3'- ucuGCUUGUGCGcCUUG-GGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 1041 0.7 0.726601
Target:  5'- cGGCG-ACGC-CGG-GCCaCGGCGUCCa -3'
miRNA:   3'- uCUGCuUGUGcGCCuUGG-GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 1072 0.72 0.583241
Target:  5'- ---aGAACccCGCGGGccGCCgGGCGCCCc -3'
miRNA:   3'- ucugCUUGu-GCGCCU--UGGgCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 1279 0.72 0.587068
Target:  5'- cGGCGGACACGgGGAACacagaCGGCacgcacacgcagcucGCCUa -3'
miRNA:   3'- uCUGCUUGUGCgCCUUGg----GCCG---------------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 1300 0.66 0.887498
Target:  5'- cGGACGGccguacggauucuACGCGCGGGugACgCCGcGCaGCCa -3'
miRNA:   3'- -UCUGCU-------------UGUGCGCCU--UG-GGC-CG-CGGg -5'
29950 5' -58.8 NC_006273.1 + 1494 0.66 0.906493
Target:  5'- aGGACGGACuguACcUGGcGCUgGGCGCCg -3'
miRNA:   3'- -UCUGCUUG---UGcGCCuUGGgCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 1670 0.69 0.763113
Target:  5'- uAGGCGAGgGCGCaGcGCUCGGCuacCCCg -3'
miRNA:   3'- -UCUGCUUgUGCGcCuUGGGCCGc--GGG- -5'
29950 5' -58.8 NC_006273.1 + 1694 0.69 0.789441
Target:  5'- cAGACGuugcuGCGCGCcgaGGAGgCgaCGGCGCUCg -3'
miRNA:   3'- -UCUGCu----UGUGCG---CCUUgG--GCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 2158 0.7 0.734935
Target:  5'- gGGGCGGACGCgacggcggcggcaGCGGcAGCagcggCGGCGCCg -3'
miRNA:   3'- -UCUGCUUGUG-------------CGCC-UUGg----GCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 2226 0.69 0.769347
Target:  5'- cGACGcggugaacguGGCGCGUGGAugCCGGCcgagacauuuacguGUCCc -3'
miRNA:   3'- uCUGC----------UUGUGCGCCUugGGCCG--------------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 2318 0.68 0.806376
Target:  5'- uGGACGGGCACGUGu-ACCCgcuGGCGgCg -3'
miRNA:   3'- -UCUGCUUGUGCGCcuUGGG---CCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 2378 0.73 0.545306
Target:  5'- uGGGCGcGCugGCgcuGGGGCgcgagUCGGCGCCCg -3'
miRNA:   3'- -UCUGCuUGugCG---CCUUG-----GGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 8018 0.68 0.814638
Target:  5'- uGACGGugGCgGCGGcaGACCCaacauGCGCCg -3'
miRNA:   3'- uCUGCUugUG-CGCC--UUGGGc----CGCGGg -5'
29950 5' -58.8 NC_006273.1 + 8292 0.67 0.8749
Target:  5'- uGACGAugauCAUGCaGGccaaGACgCGGCGCaCCa -3'
miRNA:   3'- uCUGCUu---GUGCG-CC----UUGgGCCGCG-GG- -5'
29950 5' -58.8 NC_006273.1 + 13563 0.67 0.846145
Target:  5'- cGGCGcAACGC-CGGGugcucacccGCCgGGCgGCCCg -3'
miRNA:   3'- uCUGC-UUGUGcGCCU---------UGGgCCG-CGGG- -5'
29950 5' -58.8 NC_006273.1 + 14006 0.66 0.900581
Target:  5'- gGGGCGGGCGCggggugGCGGAGCgggGaGCGCCg -3'
miRNA:   3'- -UCUGCUUGUG------CGCCUUGgg-C-CGCGGg -5'
29950 5' -58.8 NC_006273.1 + 20372 0.68 0.822752
Target:  5'- cGGCGGAC-CGCG--ACCCGGCGgUg -3'
miRNA:   3'- uCUGCUUGuGCGCcuUGGGCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 20571 0.77 0.365244
Target:  5'- uGGCGucGCACGUGGGuuccgggacagaACCCGGCGgCCg -3'
miRNA:   3'- uCUGCu-UGUGCGCCU------------UGGGCCGCgGG- -5'
29950 5' -58.8 NC_006273.1 + 21325 0.71 0.660213
Target:  5'- -cGCGAccGCAaccgcgaGCGGAACCCGG-GCUCa -3'
miRNA:   3'- ucUGCU--UGUg------CGCCUUGGGCCgCGGG- -5'
29950 5' -58.8 NC_006273.1 + 22259 0.69 0.789441
Target:  5'- cGGCGAGCgACGCGGcuccGCCguCGGUGCgCu -3'
miRNA:   3'- uCUGCUUG-UGCGCCu---UGG--GCCGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.