miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 22697 0.67 0.846145
Target:  5'- uGGgGAGCGCGCacaaaGGACCgucaGGCGCCg -3'
miRNA:   3'- uCUgCUUGUGCGc----CUUGGg---CCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 27023 0.68 0.830712
Target:  5'- cGACGAGCuCGCGGcgcguagaaAGCCaagCGGCGCa- -3'
miRNA:   3'- uCUGCUUGuGCGCC---------UUGG---GCCGCGgg -5'
29950 5' -58.8 NC_006273.1 + 27150 0.67 0.846145
Target:  5'- cGACGGugACaGUGGAuCCaugagagaGGCGCCg -3'
miRNA:   3'- uCUGCUugUG-CGCCUuGGg-------CCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 28558 0.69 0.786855
Target:  5'- -cGCGAACGCGUGGAugugcaugcagccgGCCa-GCGCUCu -3'
miRNA:   3'- ucUGCUUGUGCGCCU--------------UGGgcCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 29240 0.7 0.735857
Target:  5'- uGugGAcccuGCGCG-GGAACCUGuccGUGCCCa -3'
miRNA:   3'- uCugCU----UGUGCgCCUUGGGC---CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 29868 0.66 0.900581
Target:  5'- gAGAUGAggcACACaGCGGucuucuucugcuGAUCCGGCgacaacacGCCCu -3'
miRNA:   3'- -UCUGCU---UGUG-CGCC------------UUGGGCCG--------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 30168 0.67 0.867989
Target:  5'- uGGGCGAGCcCG-GGGGCCCGuCGCacaCCa -3'
miRNA:   3'- -UCUGCUUGuGCgCCUUGGGCcGCG---GG- -5'
29950 5' -58.8 NC_006273.1 + 30488 0.73 0.564189
Target:  5'- -cACGAGCACGCGGGcGCgCaGCGCCa -3'
miRNA:   3'- ucUGCUUGUGCGCCU-UGgGcCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 30656 0.67 0.84539
Target:  5'- cAGACGAcGCGCcgggcggcuuccuGCGGccGGCCgCGGUGCCg -3'
miRNA:   3'- -UCUGCU-UGUG-------------CGCC--UUGG-GCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 30674 0.69 0.772002
Target:  5'- -aGCGGGCGCGCcucGGGGCucgCCGGCGacaCCCa -3'
miRNA:   3'- ucUGCUUGUGCG---CCUUG---GGCCGC---GGG- -5'
29950 5' -58.8 NC_006273.1 + 31377 0.68 0.838512
Target:  5'- uGGACGAAgAgcUGCGGcAUCgCGGCacGCCCg -3'
miRNA:   3'- -UCUGCUUgU--GCGCCuUGG-GCCG--CGGG- -5'
29950 5' -58.8 NC_006273.1 + 33288 0.68 0.838512
Target:  5'- cGGCGGcaGCgguugGCGUGGuugcucAGCUCGGCGUCCg -3'
miRNA:   3'- uCUGCU--UG-----UGCGCC------UUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 33431 0.68 0.797975
Target:  5'- cGGCG-GCGCGCGacagcCCCGGCGCa- -3'
miRNA:   3'- uCUGCuUGUGCGCcuu--GGGCCGCGgg -5'
29950 5' -58.8 NC_006273.1 + 34425 0.69 0.78078
Target:  5'- uGGCGAAacCGCcguGUGGAAaguCCCGGUGCCg -3'
miRNA:   3'- uCUGCUU--GUG---CGCCUU---GGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 34751 0.69 0.763113
Target:  5'- gAGACu----CGCGG-ACUCGGUGCCCc -3'
miRNA:   3'- -UCUGcuuguGCGCCuUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 34994 0.74 0.481086
Target:  5'- gAGugGAACAUcgGUGGGuACCCGGUGUCg -3'
miRNA:   3'- -UCugCUUGUG--CGCCU-UGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 34997 0.67 0.846145
Target:  5'- cGGCGaAGCgACGCGGAGCgaCGGCGgUa -3'
miRNA:   3'- uCUGC-UUG-UGCGCCUUGg-GCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 35428 0.67 0.881619
Target:  5'- uGACGAugGCGUGGuAUCCa-CGCUCg -3'
miRNA:   3'- uCUGCUugUGCGCCuUGGGccGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 35783 0.66 0.900581
Target:  5'- uGACGAggccgauaaaguACAaGCGGccAGCCUGGCGCa- -3'
miRNA:   3'- uCUGCU------------UGUgCGCC--UUGGGCCGCGgg -5'
29950 5' -58.8 NC_006273.1 + 36442 0.68 0.80387
Target:  5'- gAGAauccGCACGCGGuGAaagaaggucuugucCUCGGCGCCCu -3'
miRNA:   3'- -UCUgcu-UGUGCGCC-UU--------------GGGCCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.