miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 234799 0.66 0.888141
Target:  5'- cGGCgGAGCGCuuGCGGcGCCauaaaGGCGCUUa -3'
miRNA:   3'- uCUG-CUUGUG--CGCCuUGGg----CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 234760 0.67 0.853606
Target:  5'- cGGAgGAACACGCGcaacagggccgcGGACUgGGUcCCCg -3'
miRNA:   3'- -UCUgCUUGUGCGC------------CUUGGgCCGcGGG- -5'
29950 5' -58.8 NC_006273.1 + 234321 0.69 0.789441
Target:  5'- cGGCGGcC-CGCGGGguucuACCCGGUggacgccgugGCCCg -3'
miRNA:   3'- uCUGCUuGuGCGCCU-----UGGGCCG----------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 233869 1.12 0.002052
Target:  5'- uAGACGAACACGCGGAACCCGGCGCCCa -3'
miRNA:   3'- -UCUGCUUGUGCGCCUUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 233740 0.7 0.726601
Target:  5'- -aGCGucGCGCGCGGGguGCCCa-CGCCCa -3'
miRNA:   3'- ucUGCu-UGUGCGCCU--UGGGccGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 233690 0.67 0.870776
Target:  5'- cGGCGGAuuucCGCGCGGGggacgggguagccgaGCgCuGCGCCCu -3'
miRNA:   3'- uCUGCUU----GUGCGCCU---------------UGgGcCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 233519 0.72 0.573697
Target:  5'- cGACGcacggccguagcAGCgACGCGGggUgCGGCGCCg -3'
miRNA:   3'- uCUGC------------UUG-UGCGCCuuGgGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 233072 0.66 0.905911
Target:  5'- -aGCGggUACacgugcccguccaGCGGGcaguACCCgaacacGGCGCCCa -3'
miRNA:   3'- ucUGCuuGUG-------------CGCCU----UGGG------CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 232855 0.66 0.902971
Target:  5'- cGGACGuAGCAaaaaagcuaacugccCGUGcGGCUCGcGCGCCCa -3'
miRNA:   3'- -UCUGC-UUGU---------------GCGCcUUGGGC-CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 232744 0.66 0.900581
Target:  5'- cAGAgcuUGAGCgucgGCGCGGcgUCUGGCGUCUu -3'
miRNA:   3'- -UCU---GCUUG----UGCGCCuuGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 230516 0.66 0.899979
Target:  5'- cGGACGGAUggggagaACgGCGGGACUUaGCcGCCCg -3'
miRNA:   3'- -UCUGCUUG-------UG-CGCCUUGGGcCG-CGGG- -5'
29950 5' -58.8 NC_006273.1 + 229850 0.67 0.846145
Target:  5'- aGGACGAucuucGCACGCGGGcugagccggaccGCgUGGUGUUCc -3'
miRNA:   3'- -UCUGCU-----UGUGCGCCU------------UGgGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 227608 0.68 0.822752
Target:  5'- uGugGcGCACGCuacuuauggGGAAccCCCGGaGCCCg -3'
miRNA:   3'- uCugCuUGUGCG---------CCUU--GGGCCgCGGG- -5'
29950 5' -58.8 NC_006273.1 + 226958 0.68 0.830712
Target:  5'- cGugGAuuuuGgGCGCGGcAACUgcaCGGCGCCa -3'
miRNA:   3'- uCugCU----UgUGCGCC-UUGG---GCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 224487 0.73 0.551893
Target:  5'- --uUGAACACcaaagucaacauuuGCGGcuACCUGGCGCCCa -3'
miRNA:   3'- ucuGCUUGUG--------------CGCCu-UGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 221787 0.69 0.744119
Target:  5'- gGGGCGGcccuccaGCACgGCGG--CCCGGgcCGCCCg -3'
miRNA:   3'- -UCUGCU-------UGUG-CGCCuuGGGCC--GCGGG- -5'
29950 5' -58.8 NC_006273.1 + 221473 0.68 0.797975
Target:  5'- aAGugGAugACAgGCacAGCCgGGUGCCCg -3'
miRNA:   3'- -UCugCU--UGUgCGccUUGGgCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 221028 0.72 0.592817
Target:  5'- cAGGC-AGCGCGgGGAGCuCCGGCGgCa -3'
miRNA:   3'- -UCUGcUUGUGCgCCUUG-GGCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 219716 0.67 0.852868
Target:  5'- cGACGAACGCGuCGucACCaGGCagugcagccgcggGCCCg -3'
miRNA:   3'- uCUGCUUGUGC-GCcuUGGgCCG-------------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 218718 0.73 0.564189
Target:  5'- -cACcGGCGCGguaGGAGCCCacGGCGCCCa -3'
miRNA:   3'- ucUGcUUGUGCg--CCUUGGG--CCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.