miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29950 5' -58.8 NC_006273.1 + 152020 0.71 0.649628
Target:  5'- cGACGuGGCcCGCGGGuccucccACCaCGGCGCCg -3'
miRNA:   3'- uCUGC-UUGuGCGCCU-------UGG-GCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 30488 0.73 0.564189
Target:  5'- -cACGAGCACGCGGGcGCgCaGCGCCa -3'
miRNA:   3'- ucUGCUUGUGCGCCU-UGgGcCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 218718 0.73 0.564189
Target:  5'- -cACcGGCGCGguaGGAGCCCacGGCGCCCa -3'
miRNA:   3'- ucUGcUUGUGCg--CCUUGGG--CCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 233519 0.72 0.573697
Target:  5'- cGACGcacggccguagcAGCgACGCGGggUgCGGCGCCg -3'
miRNA:   3'- uCUGC------------UUG-UGCGCCuuGgGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 45949 0.72 0.573697
Target:  5'- cGACGAGCucCGUcacaGcGACCCGGCGCCg -3'
miRNA:   3'- uCUGCUUGu-GCG----CcUUGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 195965 0.72 0.583241
Target:  5'- ---aGAACccCGCGGGccGCCgGGCGCCCc -3'
miRNA:   3'- ucugCUUGu-GCGCCU--UGGgCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 1279 0.72 0.587068
Target:  5'- cGGCGGACACGgGGAACacagaCGGCacgcacacgcagcucGCCUa -3'
miRNA:   3'- uCUGCUUGUGCgCCUUGg----GCCG---------------CGGG- -5'
29950 5' -58.8 NC_006273.1 + 221028 0.72 0.592817
Target:  5'- cAGGC-AGCGCGgGGAGCuCCGGCGgCa -3'
miRNA:   3'- -UCUGcUUGUGCgCCUUG-GGCCGCgGg -5'
29950 5' -58.8 NC_006273.1 + 102175 0.72 0.602418
Target:  5'- uAGGCGAGCACcuCGGugaGACCgCGGCGUCg -3'
miRNA:   3'- -UCUGCUUGUGc-GCC---UUGG-GCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 210713 0.73 0.564189
Target:  5'- cGGACGAcgGCAgCGCGGGugCCGGUuucGCUg -3'
miRNA:   3'- -UCUGCU--UGU-GCGCCUugGGCCG---CGGg -5'
29950 5' -58.8 NC_006273.1 + 224487 0.73 0.551893
Target:  5'- --uUGAACACcaaagucaacauuuGCGGcuACCUGGCGCCCa -3'
miRNA:   3'- ucuGCUUGUG--------------CGCCu-UGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 197271 0.73 0.545306
Target:  5'- uGGGCGcGCugGCgcuGGGGCgcgagUCGGCGCCCg -3'
miRNA:   3'- -UCUGCuUGugCG---CCUUG-----GGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 43441 0.84 0.140294
Target:  5'- gAGGCGGAUACGCGGuuuucACCCGGgCGCCg -3'
miRNA:   3'- -UCUGCUUGUGCGCCu----UGGGCC-GCGGg -5'
29950 5' -58.8 NC_006273.1 + 71092 0.79 0.252554
Target:  5'- gAGAUGAACuuguggcCGUGGcACCCGGCGCCg -3'
miRNA:   3'- -UCUGCUUGu------GCGCCuUGGGCCGCGGg -5'
29950 5' -58.8 NC_006273.1 + 20571 0.77 0.365244
Target:  5'- uGGCGucGCACGUGGGuuccgggacagaACCCGGCGgCCg -3'
miRNA:   3'- uCUGCu-UGUGCGCCU------------UGGGCCGCgGG- -5'
29950 5' -58.8 NC_006273.1 + 137202 0.75 0.437541
Target:  5'- -aGCGAGCucgucgccaGCGCGaGcGCUCGGCGCCCa -3'
miRNA:   3'- ucUGCUUG---------UGCGC-CuUGGGCCGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 156705 0.74 0.472204
Target:  5'- cGGCGGuGCcCGCGGAcCCCGGC-CCCu -3'
miRNA:   3'- uCUGCU-UGuGCGCCUuGGGCCGcGGG- -5'
29950 5' -58.8 NC_006273.1 + 76557 0.74 0.5082
Target:  5'- aGGACGuGGCGCGCuGuGGACUCGaaGCGCCCa -3'
miRNA:   3'- -UCUGC-UUGUGCG-C-CUUGGGC--CGCGGG- -5'
29950 5' -58.8 NC_006273.1 + 115270 0.73 0.53594
Target:  5'- uGGugGAGCACGCGGAagGCauGGCuUCCg -3'
miRNA:   3'- -UCugCUUGUGCGCCU--UGggCCGcGGG- -5'
29950 5' -58.8 NC_006273.1 + 167183 0.73 0.544367
Target:  5'- cGGCGGGCGCagcggccGCGGAGgCCGGCGUa- -3'
miRNA:   3'- uCUGCUUGUG-------CGCCUUgGGCCGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.