Results 1 - 20 of 283 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29950 | 5' | -58.8 | NC_006273.1 | + | 38976 | 1.12 | 0.002052 |
Target: 5'- uAGACGAACACGCGGAACCCGGCGCCCa -3' miRNA: 3'- -UCUGCUUGUGCGCCUUGGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 202033 | 0.72 | 0.600496 |
Target: 5'- gGGACGcgccgcaggaucGCACGCGGcugccgcaguucAGCUCGGCGCUCu -3' miRNA: 3'- -UCUGCu-----------UGUGCGCC------------UUGGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 140657 | 0.72 | 0.602418 |
Target: 5'- aAGGgGAGCugGgUGGGGgaucCCCGGuCGCCCa -3' miRNA: 3'- -UCUgCUUGugC-GCCUU----GGGCC-GCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 153313 | 0.66 | 0.912197 |
Target: 5'- cGGACGGacugGCACGCaGGACaaGGgacagaaGCCCa -3' miRNA: 3'- -UCUGCU----UGUGCGcCUUGggCCg------CGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 197192 | 0.78 | 0.321151 |
Target: 5'- cGGAUGAGCggccgcgGCGCGG-GCUCGGCGUCCc -3' miRNA: 3'- -UCUGCUUG-------UGCGCCuUGGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 135693 | 0.77 | 0.368278 |
Target: 5'- aAGACG-AC-CGCGGucccucccaguccCCCGGCGCCCu -3' miRNA: 3'- -UCUGCuUGuGCGCCuu-----------GGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 164268 | 0.76 | 0.411707 |
Target: 5'- gAGGCGAaacugguGCugGCGGcGCCgGGUGCCa -3' miRNA: 3'- -UCUGCU-------UGugCGCCuUGGgCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 197494 | 0.75 | 0.446072 |
Target: 5'- -uGCGAGaccuGCGCGaGGCCCGGCGCCa -3' miRNA: 3'- ucUGCUUg---UGCGCcUUGGGCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 34994 | 0.74 | 0.481086 |
Target: 5'- gAGugGAACAUcgGUGGGuACCCGGUGUCg -3' miRNA: 3'- -UCugCUUGUG--CGCCU-UGGGCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 1072 | 0.72 | 0.583241 |
Target: 5'- ---aGAACccCGCGGGccGCCgGGCGCCCc -3' miRNA: 3'- ucugCUUGu-GCGCCU--UGGgCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 174441 | 0.73 | 0.517383 |
Target: 5'- cGACGuuGCACGCGGAaaguucGCCCGcgaGCGCUg -3' miRNA: 3'- uCUGCu-UGUGCGCCU------UGGGC---CGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 70686 | 0.74 | 0.478412 |
Target: 5'- cGGugGAggGCGCGCGGcAacucgagaugguguACCCGGCaCCCg -3' miRNA: 3'- -UCugCU--UGUGCGCC-U--------------UGGGCCGcGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 213114 | 0.82 | 0.177946 |
Target: 5'- cAGAUGAGCGCaccgacgGCGGAGCcgcgucgcucgCCGGCGCCCg -3' miRNA: 3'- -UCUGCUUGUG-------CGCCUUG-----------GGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 2378 | 0.73 | 0.545306 |
Target: 5'- uGGGCGcGCugGCgcuGGGGCgcgagUCGGCGCCCg -3' miRNA: 3'- -UCUGCuUGugCG---CCUUG-----GGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 141051 | 0.82 | 0.178369 |
Target: 5'- gGGACGGGCcCGCGGAcggaCCGGCGCCg -3' miRNA: 3'- -UCUGCUUGuGCGCCUug--GGCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 47216 | 0.75 | 0.460783 |
Target: 5'- cGGCGAGCcauggaugugcccgACcCGGAACUCGGCGaCCCg -3' miRNA: 3'- uCUGCUUG--------------UGcGCCUUGGGCCGC-GGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 38626 | 0.72 | 0.582286 |
Target: 5'- cGACGcacggccgucagcAGCgACGCGGggUgCGGCGCCg -3' miRNA: 3'- uCUGC-------------UUG-UGCGCCuuGgGCCGCGGg -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 140994 | 0.72 | 0.602418 |
Target: 5'- cGGAgCGGGC-CGC---GCCCGGUGCCCg -3' miRNA: 3'- -UCU-GCUUGuGCGccuUGGGCCGCGGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 160547 | 0.79 | 0.276221 |
Target: 5'- cGACGAGgACGCGGAGCCC-GCGgCUg -3' miRNA: 3'- uCUGCUUgUGCGCCUUGGGcCGCgGG- -5' |
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29950 | 5' | -58.8 | NC_006273.1 | + | 174824 | 0.76 | 0.380583 |
Target: 5'- cGGACGAGgAacaGCGGGuguCCuCGGUGCCCg -3' miRNA: 3'- -UCUGCUUgUg--CGCCUu--GG-GCCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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