miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29951 3' -53.5 NC_006273.1 + 99298 0.66 0.990288
Target:  5'- -cGCCCac-GGCGUC-CUcggcgucgucgGAGGCCGGu -3'
miRNA:   3'- gaCGGGcuaCCGUAGuGA-----------UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 15429 0.66 0.988987
Target:  5'- uUGCCCGAUGaGCGaCGC--GAGCgCGa -3'
miRNA:   3'- gACGGGCUAC-CGUaGUGauUUCG-GCc -5'
29951 3' -53.5 NC_006273.1 + 173947 0.66 0.988987
Target:  5'- gUGCCCGAgggccUGGUAgaguucgaggCGC---AGCCGGg -3'
miRNA:   3'- gACGGGCU-----ACCGUa---------GUGauuUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 148684 0.66 0.988987
Target:  5'- cCUGCCCGA---CAUCGu--GGGCCGGc -3'
miRNA:   3'- -GACGGGCUaccGUAGUgauUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 149669 0.66 0.987554
Target:  5'- -cGCCCGcggcguuagGUGGCuGUUGCUGcgcGCCGGu -3'
miRNA:   3'- gaCGGGC---------UACCG-UAGUGAUuu-CGGCC- -5'
29951 3' -53.5 NC_006273.1 + 49060 0.66 0.987554
Target:  5'- -cGCaCGAUGGCcUCACgccGGCCGc -3'
miRNA:   3'- gaCGgGCUACCGuAGUGauuUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 97226 0.66 0.987554
Target:  5'- cCUGCCCGcaggccGUGGCcgcCGCcauGAGCCGc -3'
miRNA:   3'- -GACGGGC------UACCGua-GUGau-UUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 206490 0.66 0.987554
Target:  5'- gCUGCCuCGuuauccGGCGUCGCUGgcGCuUGGu -3'
miRNA:   3'- -GACGG-GCua----CCGUAGUGAUuuCG-GCC- -5'
29951 3' -53.5 NC_006273.1 + 78689 0.66 0.985982
Target:  5'- -gGUCCGcgGGCAcCGCc---GCCGGa -3'
miRNA:   3'- gaCGGGCuaCCGUaGUGauuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 171316 0.66 0.984082
Target:  5'- gCUGCuCUGAUGGCcgCAgCUcagcagagaggagGAGGCCGc -3'
miRNA:   3'- -GACG-GGCUACCGuaGU-GA-------------UUUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 118976 0.67 0.981792
Target:  5'- gUGUCCGAguccucgucgccgcUGGCuUC-CUcGAAGCCGGc -3'
miRNA:   3'- gACGGGCU--------------ACCGuAGuGA-UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 21759 0.67 0.980347
Target:  5'- gCUGCCUGggGGCcUCGCUuuuGGGuuGc -3'
miRNA:   3'- -GACGGGCuaCCGuAGUGAu--UUCggCc -5'
29951 3' -53.5 NC_006273.1 + 230858 0.67 0.980347
Target:  5'- uCUGgCUGAgguUGGUGUCGCUAAuGCCa- -3'
miRNA:   3'- -GACgGGCU---ACCGUAGUGAUUuCGGcc -5'
29951 3' -53.5 NC_006273.1 + 43199 0.67 0.979702
Target:  5'- uCUGUUCGAUGGUccacgacGUCGCgaucggcaggcGGGCCGGc -3'
miRNA:   3'- -GACGGGCUACCG-------UAGUGau---------UUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 120573 0.67 0.978137
Target:  5'- -gGCCCGGgcaaGGCGUCuu----GCCGGu -3'
miRNA:   3'- gaCGGGCUa---CCGUAGugauuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 136503 0.67 0.978137
Target:  5'- uUGCCCGAagcggcugUGGCuUCuCUGGAGaCGGc -3'
miRNA:   3'- gACGGGCU--------ACCGuAGuGAUUUCgGCC- -5'
29951 3' -53.5 NC_006273.1 + 81741 0.67 0.978137
Target:  5'- uUGCCCGA--GCccugCGC-GGAGCCGGg -3'
miRNA:   3'- gACGGGCUacCGua--GUGaUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 170817 0.67 0.975748
Target:  5'- -cGCCCuGGUGGCAgcuggccugugUgACUuucauggcGAGGCCGGc -3'
miRNA:   3'- gaCGGG-CUACCGU-----------AgUGA--------UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 45117 0.67 0.975748
Target:  5'- cCUG-CCGAUGGguUCGCUAcugcAGCUGc -3'
miRNA:   3'- -GACgGGCUACCguAGUGAUu---UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 197254 0.67 0.975748
Target:  5'- uCUGCgCGcgGGCGUgcugggcgCGCUGgcGCUGGg -3'
miRNA:   3'- -GACGgGCuaCCGUA--------GUGAUuuCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.