Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29951 | 3' | -53.5 | NC_006273.1 | + | 15429 | 0.66 | 0.988987 |
Target: 5'- uUGCCCGAUGaGCGaCGC--GAGCgCGa -3' miRNA: 3'- gACGGGCUAC-CGUaGUGauUUCG-GCc -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 97226 | 0.66 | 0.987554 |
Target: 5'- cCUGCCCGcaggccGUGGCcgcCGCcauGAGCCGc -3' miRNA: 3'- -GACGGGC------UACCGua-GUGau-UUCGGCc -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 206490 | 0.66 | 0.987554 |
Target: 5'- gCUGCCuCGuuauccGGCGUCGCUGgcGCuUGGu -3' miRNA: 3'- -GACGG-GCua----CCGUAGUGAUuuCG-GCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 99298 | 0.66 | 0.990288 |
Target: 5'- -cGCCCac-GGCGUC-CUcggcgucgucgGAGGCCGGu -3' miRNA: 3'- gaCGGGcuaCCGUAGuGA-----------UUUCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 78689 | 0.66 | 0.985982 |
Target: 5'- -gGUCCGcgGGCAcCGCc---GCCGGa -3' miRNA: 3'- gaCGGGCuaCCGUaGUGauuuCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 173947 | 0.66 | 0.988987 |
Target: 5'- gUGCCCGAgggccUGGUAgaguucgaggCGC---AGCCGGg -3' miRNA: 3'- gACGGGCU-----ACCGUa---------GUGauuUCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 149669 | 0.66 | 0.987554 |
Target: 5'- -cGCCCGcggcguuagGUGGCuGUUGCUGcgcGCCGGu -3' miRNA: 3'- gaCGGGC---------UACCG-UAGUGAUuu-CGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 148684 | 0.66 | 0.988987 |
Target: 5'- cCUGCCCGA---CAUCGu--GGGCCGGc -3' miRNA: 3'- -GACGGGCUaccGUAGUgauUUCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 49060 | 0.66 | 0.987554 |
Target: 5'- -cGCaCGAUGGCcUCACgccGGCCGc -3' miRNA: 3'- gaCGgGCUACCGuAGUGauuUCGGCc -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 171316 | 0.66 | 0.984082 |
Target: 5'- gCUGCuCUGAUGGCcgCAgCUcagcagagaggagGAGGCCGc -3' miRNA: 3'- -GACG-GGCUACCGuaGU-GA-------------UUUCGGCc -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 81741 | 0.67 | 0.978137 |
Target: 5'- uUGCCCGA--GCccugCGC-GGAGCCGGg -3' miRNA: 3'- gACGGGCUacCGua--GUGaUUUCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 136503 | 0.67 | 0.978137 |
Target: 5'- uUGCCCGAagcggcugUGGCuUCuCUGGAGaCGGc -3' miRNA: 3'- gACGGGCU--------ACCGuAGuGAUUUCgGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 120573 | 0.67 | 0.978137 |
Target: 5'- -gGCCCGGgcaaGGCGUCuu----GCCGGu -3' miRNA: 3'- gaCGGGCUa---CCGUAGugauuuCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 197254 | 0.67 | 0.975748 |
Target: 5'- uCUGCgCGcgGGCGUgcugggcgCGCUGgcGCUGGg -3' miRNA: 3'- -GACGgGCuaCCGUA--------GUGAUuuCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 56240 | 0.67 | 0.972907 |
Target: 5'- gUGUCCGAUccgcgcgGGaCGUCGCUGAgggacgguGGCUGGu -3' miRNA: 3'- gACGGGCUA-------CC-GUAGUGAUU--------UCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 2361 | 0.67 | 0.975748 |
Target: 5'- uCUGCgCGcgGGCGUgcugggcgCGCUGgcGCUGGg -3' miRNA: 3'- -GACGgGCuaCCGUA--------GUGAUuuCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 21759 | 0.67 | 0.980347 |
Target: 5'- gCUGCCUGggGGCcUCGCUuuuGGGuuGc -3' miRNA: 3'- -GACGGGCuaCCGuAGUGAu--UUCggCc -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 43199 | 0.67 | 0.979702 |
Target: 5'- uCUGUUCGAUGGUccacgacGUCGCgaucggcaggcGGGCCGGc -3' miRNA: 3'- -GACGGGCUACCG-------UAGUGau---------UUCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 24416 | 0.67 | 0.973175 |
Target: 5'- -gGCCgUGGUGGCcgUGCU-GGGCUGGg -3' miRNA: 3'- gaCGG-GCUACCGuaGUGAuUUCGGCC- -5' |
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29951 | 3' | -53.5 | NC_006273.1 | + | 170817 | 0.67 | 0.975748 |
Target: 5'- -cGCCCuGGUGGCAgcuggccugugUgACUuucauggcGAGGCCGGc -3' miRNA: 3'- gaCGGG-CUACCGU-----------AgUGA--------UUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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