miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29951 3' -53.5 NC_006273.1 + 35740 1.12 0.005192
Target:  5'- cCUGCCCGAUGGCAUCACUAAAGCCGGg -3'
miRNA:   3'- -GACGGGCUACCGUAGUGAUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 93201 0.79 0.500963
Target:  5'- gCUGUCCGA-GGgGUCGCUGccGCCGGu -3'
miRNA:   3'- -GACGGGCUaCCgUAGUGAUuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 190503 0.77 0.589441
Target:  5'- -gGCuCCGAcgUGGCGUUAUaaUGAAGCCGGg -3'
miRNA:   3'- gaCG-GGCU--ACCGUAGUG--AUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 122006 0.76 0.619695
Target:  5'- -cGCCgCGGUGGCAUgGCgucGAGUCGGg -3'
miRNA:   3'- gaCGG-GCUACCGUAgUGau-UUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 68005 0.75 0.669193
Target:  5'- uCUGCCCGgcGGCGUCAUggguggcggaggacuGCCGGc -3'
miRNA:   3'- -GACGGGCuaCCGUAGUGauuu-----------CGGCC- -5'
29951 3' -53.5 NC_006273.1 + 1942 0.73 0.804091
Target:  5'- gCUGCCCGcgcgGUGGCuggguugCGCggcGGGGCCGGc -3'
miRNA:   3'- -GACGGGC----UACCGua-----GUGa--UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 196834 0.73 0.804091
Target:  5'- gCUGCCCGcgcgGUGGCuggguugCGCggcGGGGCCGGc -3'
miRNA:   3'- -GACGGGC----UACCGua-----GUGa--UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 148747 0.72 0.820491
Target:  5'- gUGCCCGAggaugagUGGCAggucuucggUACcGAGGCCGGc -3'
miRNA:   3'- gACGGGCU-------ACCGUa--------GUGaUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 49679 0.72 0.824709
Target:  5'- gCUGCCCGAUGaGCAcgaugaguugguagCGCaUAAAGcCCGGa -3'
miRNA:   3'- -GACGGGCUAC-CGUa-------------GUG-AUUUC-GGCC- -5'
29951 3' -53.5 NC_006273.1 + 149425 0.71 0.861389
Target:  5'- gCUGCCCGAUGGCA-CGg-GGGGCgaCGGc -3'
miRNA:   3'- -GACGGGCUACCGUaGUgaUUUCG--GCC- -5'
29951 3' -53.5 NC_006273.1 + 134237 0.71 0.868819
Target:  5'- gUGCCCGA-GGCcUUGCgguugguggugAAGGCCGGg -3'
miRNA:   3'- gACGGGCUaCCGuAGUGa----------UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 221115 0.71 0.868819
Target:  5'- -aGCCgGAcaaccGGCGUCACUGAcagaAGCCGa -3'
miRNA:   3'- gaCGGgCUa----CCGUAGUGAUU----UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 70361 0.71 0.8885
Target:  5'- -cGCCCGAgGGCAUCACgcucuuuuacGGCCu- -3'
miRNA:   3'- gaCGGGCUaCCGUAGUGauu-------UCGGcc -5'
29951 3' -53.5 NC_006273.1 + 49630 0.71 0.890508
Target:  5'- -cGUCCGAUGGCGguuuugacaacccggCACUGAcagaAGCCGu -3'
miRNA:   3'- gaCGGGCUACCGUa--------------GUGAUU----UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 71740 0.71 0.896411
Target:  5'- -cGCCCGGcggugguggUGGCGgcggCAgUGGAGCCGa -3'
miRNA:   3'- gaCGGGCU---------ACCGUa---GUgAUUUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 189842 0.7 0.908873
Target:  5'- -cGCCgGGUGGCAUCuGCggcauGGCgGGg -3'
miRNA:   3'- gaCGGgCUACCGUAG-UGauu--UCGgCC- -5'
29951 3' -53.5 NC_006273.1 + 139114 0.7 0.920414
Target:  5'- -cGCCCucGAcGGCggUACUGAAGCCGc -3'
miRNA:   3'- gaCGGG--CUaCCGuaGUGAUUUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 64770 0.7 0.920414
Target:  5'- gCUGCCCGccGGCGg-GCggcuGCCGGu -3'
miRNA:   3'- -GACGGGCuaCCGUagUGauuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 148463 0.69 0.935979
Target:  5'- -gGCgCUGAUGGCcuacUCGCgccAGCCGGa -3'
miRNA:   3'- gaCG-GGCUACCGu---AGUGauuUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 177532 0.69 0.940239
Target:  5'- -gGCCCGcUGGCucggcgcggcuguAUUAUUAGAcGCCGGg -3'
miRNA:   3'- gaCGGGCuACCG-------------UAGUGAUUU-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.