miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29951 3' -53.5 NC_006273.1 + 197254 0.67 0.975748
Target:  5'- uCUGCgCGcgGGCGUgcugggcgCGCUGgcGCUGGg -3'
miRNA:   3'- -GACGgGCuaCCGUA--------GUGAUuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 2679 0.67 0.973175
Target:  5'- -gGCCaCGGUGGU--UAUgGAAGCCGGu -3'
miRNA:   3'- gaCGG-GCUACCGuaGUGaUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 24416 0.67 0.973175
Target:  5'- -gGCCgUGGUGGCcgUGCU-GGGCUGGg -3'
miRNA:   3'- gaCGG-GCUACCGuaGUGAuUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 30690 0.67 0.973175
Target:  5'- -gGCUCGccGGCGaCACccAAGGCCGGc -3'
miRNA:   3'- gaCGGGCuaCCGUaGUGa-UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 56240 0.67 0.972907
Target:  5'- gUGUCCGAUccgcgcgGGaCGUCGCUGAgggacgguGGCUGGu -3'
miRNA:   3'- gACGGGCUA-------CC-GUAGUGAUU--------UCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 154425 0.68 0.970408
Target:  5'- gUGCCCGAcgacagcucgUGGCcgCGCUAucgauGCCu- -3'
miRNA:   3'- gACGGGCU----------ACCGuaGUGAUuu---CGGcc -5'
29951 3' -53.5 NC_006273.1 + 188984 0.68 0.970408
Target:  5'- -gGCCCGAUGGgGcUCGCgaucccuGGGCCa- -3'
miRNA:   3'- gaCGGGCUACCgU-AGUGau-----UUCGGcc -5'
29951 3' -53.5 NC_006273.1 + 127216 0.68 0.968951
Target:  5'- -cGUCCGAaacgccgUGGUGUCGCgccucgauguuGGCCGGg -3'
miRNA:   3'- gaCGGGCU-------ACCGUAGUGauu--------UCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 147969 0.68 0.967444
Target:  5'- -cGCCCGA-GGCGga---GGAGCCGGc -3'
miRNA:   3'- gaCGGGCUaCCGUagugaUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 41882 0.68 0.964275
Target:  5'- aCUGCCCGAggauaacaGGC--CGCUGAAaauGCUGGa -3'
miRNA:   3'- -GACGGGCUa-------CCGuaGUGAUUU---CGGCC- -5'
29951 3' -53.5 NC_006273.1 + 164870 0.68 0.957303
Target:  5'- aCUGCuuGAgGGCcauagCGCgaguGAGCCGGc -3'
miRNA:   3'- -GACGggCUaCCGua---GUGau--UUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 227018 0.68 0.95349
Target:  5'- aCUGCaCGAUGGCcgCACaGAcccuAGCCGu -3'
miRNA:   3'- -GACGgGCUACCGuaGUGaUU----UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 59402 0.69 0.945192
Target:  5'- -cGCCCaacUGGCGUCACgcgagaaAGGGUCGGc -3'
miRNA:   3'- gaCGGGcu-ACCGUAGUGa------UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 177532 0.69 0.940239
Target:  5'- -gGCCCGcUGGCucggcgcggcuguAUUAUUAGAcGCCGGg -3'
miRNA:   3'- gaCGGGCuACCG-------------UAGUGAUUU-CGGCC- -5'
29951 3' -53.5 NC_006273.1 + 148463 0.69 0.935979
Target:  5'- -gGCgCUGAUGGCcuacUCGCgccAGCCGGa -3'
miRNA:   3'- gaCG-GGCUACCGu---AGUGauuUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 139114 0.7 0.920414
Target:  5'- -cGCCCucGAcGGCggUACUGAAGCCGc -3'
miRNA:   3'- gaCGGG--CUaCCGuaGUGAUUUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 64770 0.7 0.920414
Target:  5'- gCUGCCCGccGGCGg-GCggcuGCCGGu -3'
miRNA:   3'- -GACGGGCuaCCGUagUGauuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 189842 0.7 0.908873
Target:  5'- -cGCCgGGUGGCAUCuGCggcauGGCgGGg -3'
miRNA:   3'- gaCGGgCUACCGUAG-UGauu--UCGgCC- -5'
29951 3' -53.5 NC_006273.1 + 71740 0.71 0.896411
Target:  5'- -cGCCCGGcggugguggUGGCGgcggCAgUGGAGCCGa -3'
miRNA:   3'- gaCGGGCU---------ACCGUa---GUgAUUUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 49630 0.71 0.890508
Target:  5'- -cGUCCGAUGGCGguuuugacaacccggCACUGAcagaAGCCGu -3'
miRNA:   3'- gaCGGGCUACCGUa--------------GUGAUU----UCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.