miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29951 3' -53.5 NC_006273.1 + 1942 0.73 0.804091
Target:  5'- gCUGCCCGcgcgGUGGCuggguugCGCggcGGGGCCGGc -3'
miRNA:   3'- -GACGGGC----UACCGua-----GUGa--UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 2361 0.67 0.975748
Target:  5'- uCUGCgCGcgGGCGUgcugggcgCGCUGgcGCUGGg -3'
miRNA:   3'- -GACGgGCuaCCGUA--------GUGAUuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 2679 0.67 0.973175
Target:  5'- -gGCCaCGGUGGU--UAUgGAAGCCGGu -3'
miRNA:   3'- gaCGG-GCUACCGuaGUGaUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 15429 0.66 0.988987
Target:  5'- uUGCCCGAUGaGCGaCGC--GAGCgCGa -3'
miRNA:   3'- gACGGGCUAC-CGUaGUGauUUCG-GCc -5'
29951 3' -53.5 NC_006273.1 + 21759 0.67 0.980347
Target:  5'- gCUGCCUGggGGCcUCGCUuuuGGGuuGc -3'
miRNA:   3'- -GACGGGCuaCCGuAGUGAu--UUCggCc -5'
29951 3' -53.5 NC_006273.1 + 24416 0.67 0.973175
Target:  5'- -gGCCgUGGUGGCcgUGCU-GGGCUGGg -3'
miRNA:   3'- gaCGG-GCUACCGuaGUGAuUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 30690 0.67 0.973175
Target:  5'- -gGCUCGccGGCGaCACccAAGGCCGGc -3'
miRNA:   3'- gaCGGGCuaCCGUaGUGa-UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 35740 1.12 0.005192
Target:  5'- cCUGCCCGAUGGCAUCACUAAAGCCGGg -3'
miRNA:   3'- -GACGGGCUACCGUAGUGAUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 41882 0.68 0.964275
Target:  5'- aCUGCCCGAggauaacaGGC--CGCUGAAaauGCUGGa -3'
miRNA:   3'- -GACGGGCUa-------CCGuaGUGAUUU---CGGCC- -5'
29951 3' -53.5 NC_006273.1 + 43199 0.67 0.979702
Target:  5'- uCUGUUCGAUGGUccacgacGUCGCgaucggcaggcGGGCCGGc -3'
miRNA:   3'- -GACGGGCUACCG-------UAGUGau---------UUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 45117 0.67 0.975748
Target:  5'- cCUG-CCGAUGGguUCGCUAcugcAGCUGc -3'
miRNA:   3'- -GACgGGCUACCguAGUGAUu---UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 49060 0.66 0.987554
Target:  5'- -cGCaCGAUGGCcUCACgccGGCCGc -3'
miRNA:   3'- gaCGgGCUACCGuAGUGauuUCGGCc -5'
29951 3' -53.5 NC_006273.1 + 49630 0.71 0.890508
Target:  5'- -cGUCCGAUGGCGguuuugacaacccggCACUGAcagaAGCCGu -3'
miRNA:   3'- gaCGGGCUACCGUa--------------GUGAUU----UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 49679 0.72 0.824709
Target:  5'- gCUGCCCGAUGaGCAcgaugaguugguagCGCaUAAAGcCCGGa -3'
miRNA:   3'- -GACGGGCUAC-CGUa-------------GUG-AUUUC-GGCC- -5'
29951 3' -53.5 NC_006273.1 + 56240 0.67 0.972907
Target:  5'- gUGUCCGAUccgcgcgGGaCGUCGCUGAgggacgguGGCUGGu -3'
miRNA:   3'- gACGGGCUA-------CC-GUAGUGAUU--------UCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 59402 0.69 0.945192
Target:  5'- -cGCCCaacUGGCGUCACgcgagaaAGGGUCGGc -3'
miRNA:   3'- gaCGGGcu-ACCGUAGUGa------UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 64770 0.7 0.920414
Target:  5'- gCUGCCCGccGGCGg-GCggcuGCCGGu -3'
miRNA:   3'- -GACGGGCuaCCGUagUGauuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 68005 0.75 0.669193
Target:  5'- uCUGCCCGgcGGCGUCAUggguggcggaggacuGCCGGc -3'
miRNA:   3'- -GACGGGCuaCCGUAGUGauuu-----------CGGCC- -5'
29951 3' -53.5 NC_006273.1 + 70361 0.71 0.8885
Target:  5'- -cGCCCGAgGGCAUCACgcucuuuuacGGCCu- -3'
miRNA:   3'- gaCGGGCUaCCGUAGUGauu-------UCGGcc -5'
29951 3' -53.5 NC_006273.1 + 71740 0.71 0.896411
Target:  5'- -cGCCCGGcggugguggUGGCGgcggCAgUGGAGCCGa -3'
miRNA:   3'- gaCGGGCU---------ACCGUa---GUgAUUUCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.