miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29951 3' -53.5 NC_006273.1 + 230858 0.67 0.980347
Target:  5'- uCUGgCUGAgguUGGUGUCGCUAAuGCCa- -3'
miRNA:   3'- -GACgGGCU---ACCGUAGUGAUUuCGGcc -5'
29951 3' -53.5 NC_006273.1 + 41882 0.68 0.964275
Target:  5'- aCUGCCCGAggauaacaGGC--CGCUGAAaauGCUGGa -3'
miRNA:   3'- -GACGGGCUa-------CCGuaGUGAUUU---CGGCC- -5'
29951 3' -53.5 NC_006273.1 + 127216 0.68 0.968951
Target:  5'- -cGUCCGAaacgccgUGGUGUCGCgccucgauguuGGCCGGg -3'
miRNA:   3'- gaCGGGCU-------ACCGUAGUGauu--------UCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 56240 0.67 0.972907
Target:  5'- gUGUCCGAUccgcgcgGGaCGUCGCUGAgggacgguGGCUGGu -3'
miRNA:   3'- gACGGGCUA-------CC-GUAGUGAUU--------UCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 30690 0.67 0.973175
Target:  5'- -gGCUCGccGGCGaCACccAAGGCCGGc -3'
miRNA:   3'- gaCGGGCuaCCGUaGUGa-UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 197254 0.67 0.975748
Target:  5'- uCUGCgCGcgGGCGUgcugggcgCGCUGgcGCUGGg -3'
miRNA:   3'- -GACGgGCuaCCGUA--------GUGAUuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 120573 0.67 0.978137
Target:  5'- -gGCCCGGgcaaGGCGUCuu----GCCGGu -3'
miRNA:   3'- gaCGGGCUa---CCGUAGugauuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 136503 0.67 0.978137
Target:  5'- uUGCCCGAagcggcugUGGCuUCuCUGGAGaCGGc -3'
miRNA:   3'- gACGGGCU--------ACCGuAGuGAUUUCgGCC- -5'
29951 3' -53.5 NC_006273.1 + 81741 0.67 0.978137
Target:  5'- uUGCCCGA--GCccugCGC-GGAGCCGGg -3'
miRNA:   3'- gACGGGCUacCGua--GUGaUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 164870 0.68 0.957303
Target:  5'- aCUGCuuGAgGGCcauagCGCgaguGAGCCGGc -3'
miRNA:   3'- -GACGggCUaCCGua---GUGau--UUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 227018 0.68 0.95349
Target:  5'- aCUGCaCGAUGGCcgCACaGAcccuAGCCGu -3'
miRNA:   3'- -GACGgGCUACCGuaGUGaUU----UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 59402 0.69 0.945192
Target:  5'- -cGCCCaacUGGCGUCACgcgagaaAGGGUCGGc -3'
miRNA:   3'- gaCGGGcu-ACCGUAGUGa------UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 196834 0.73 0.804091
Target:  5'- gCUGCCCGcgcgGUGGCuggguugCGCggcGGGGCCGGc -3'
miRNA:   3'- -GACGGGC----UACCGua-----GUGa--UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 148747 0.72 0.820491
Target:  5'- gUGCCCGAggaugagUGGCAggucuucggUACcGAGGCCGGc -3'
miRNA:   3'- gACGGGCU-------ACCGUa--------GUGaUUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 49679 0.72 0.824709
Target:  5'- gCUGCCCGAUGaGCAcgaugaguugguagCGCaUAAAGcCCGGa -3'
miRNA:   3'- -GACGGGCUAC-CGUa-------------GUG-AUUUC-GGCC- -5'
29951 3' -53.5 NC_006273.1 + 134237 0.71 0.868819
Target:  5'- gUGCCCGA-GGCcUUGCgguugguggugAAGGCCGGg -3'
miRNA:   3'- gACGGGCUaCCGuAGUGa----------UUUCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 221115 0.71 0.868819
Target:  5'- -aGCCgGAcaaccGGCGUCACUGAcagaAGCCGa -3'
miRNA:   3'- gaCGGgCUa----CCGUAGUGAUU----UCGGCc -5'
29951 3' -53.5 NC_006273.1 + 189842 0.7 0.908873
Target:  5'- -cGCCgGGUGGCAUCuGCggcauGGCgGGg -3'
miRNA:   3'- gaCGGgCUACCGUAG-UGauu--UCGgCC- -5'
29951 3' -53.5 NC_006273.1 + 64770 0.7 0.920414
Target:  5'- gCUGCCCGccGGCGg-GCggcuGCCGGu -3'
miRNA:   3'- -GACGGGCuaCCGUagUGauuuCGGCC- -5'
29951 3' -53.5 NC_006273.1 + 139114 0.7 0.920414
Target:  5'- -cGCCCucGAcGGCggUACUGAAGCCGc -3'
miRNA:   3'- gaCGGG--CUaCCGuaGUGAUUUCGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.