miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29951 5' -61.3 NC_006273.1 + 55108 0.66 0.782327
Target:  5'- gUUCGGUgCCUGGccAGUCCcuACGGCCu- -3'
miRNA:   3'- gAGGCCG-GGACCu-UCAGG--UGCCGGuu -5'
29951 5' -61.3 NC_006273.1 + 64396 0.66 0.782327
Target:  5'- gUCCGuaCC-GGAGGUCCugGGUg-- -3'
miRNA:   3'- gAGGCcgGGaCCUUCAGGugCCGguu -5'
29951 5' -61.3 NC_006273.1 + 167311 0.66 0.782327
Target:  5'- aCUCCGGCCacagcGGcGGcagCgGCGGCCAc -3'
miRNA:   3'- -GAGGCCGGga---CCuUCa--GgUGCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 183741 0.66 0.773508
Target:  5'- gCUCCGGCgCaacGGGugcuGUCCGCGccGCCGAg -3'
miRNA:   3'- -GAGGCCGgGa--CCUu---CAGGUGC--CGGUU- -5'
29951 5' -61.3 NC_006273.1 + 160343 0.66 0.764575
Target:  5'- ---gGGCCCgugaggGGGAGUCgUugGGCCGu -3'
miRNA:   3'- gaggCCGGGa-----CCUUCAG-GugCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 79635 0.66 0.755537
Target:  5'- --aUGGUCCccaAAGUCCACGGCCAc -3'
miRNA:   3'- gagGCCGGGaccUUCAGGUGCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 129304 0.66 0.7464
Target:  5'- aUCUGGCuCCcGGGua-CCGCGGCCGg -3'
miRNA:   3'- gAGGCCG-GGaCCUucaGGUGCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 164276 0.66 0.736246
Target:  5'- -aCUGGUgCUGGcggcgccGGGUgCCACGGCCAc -3'
miRNA:   3'- gaGGCCGgGACC-------UUCA-GGUGCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 95025 0.67 0.699523
Target:  5'- gUCCGGCCgccagucgugaCcGGggGUCCcuCGGCCu- -3'
miRNA:   3'- gAGGCCGG-----------GaCCuuCAGGu-GCCGGuu -5'
29951 5' -61.3 NC_006273.1 + 52760 0.67 0.699523
Target:  5'- -cCCGGCCUcGGccAAGagCGCGGCCAc -3'
miRNA:   3'- gaGGCCGGGaCC--UUCagGUGCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 199608 0.67 0.689963
Target:  5'- -cUUGGCCgUGGAcuUCCAgGGCCGGa -3'
miRNA:   3'- gaGGCCGGgACCUucAGGUgCCGGUU- -5'
29951 5' -61.3 NC_006273.1 + 148665 0.68 0.670722
Target:  5'- -gCCGG-CCUGGAGGUCUGCGcGCa-- -3'
miRNA:   3'- gaGGCCgGGACCUUCAGGUGC-CGguu -5'
29951 5' -61.3 NC_006273.1 + 188796 0.68 0.670722
Target:  5'- -gUUGcGCaCCUGGAAGUCCACcaaGGCCu- -3'
miRNA:   3'- gaGGC-CG-GGACCUUCAGGUG---CCGGuu -5'
29951 5' -61.3 NC_006273.1 + 110117 0.69 0.612549
Target:  5'- gUCCaaagGGCUCguuUGGccAGGUCCACGGCCGu -3'
miRNA:   3'- gAGG----CCGGG---ACC--UUCAGGUGCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 45870 0.7 0.507988
Target:  5'- --gCGGCCCUGGAAcUCUcacacagcgcgGCGGCCGGg -3'
miRNA:   3'- gagGCCGGGACCUUcAGG-----------UGCCGGUU- -5'
29951 5' -61.3 NC_006273.1 + 130211 0.7 0.507988
Target:  5'- uCUCCGGCuaCCUGGGcgAGgCCGCGGCg-- -3'
miRNA:   3'- -GAGGCCG--GGACCU--UCaGGUGCCGguu -5'
29951 5' -61.3 NC_006273.1 + 167151 0.71 0.4629
Target:  5'- -aCgGGCCgCUGGAAGUCgGCGGgCGGg -3'
miRNA:   3'- gaGgCCGG-GACCUUCAGgUGCCgGUU- -5'
29951 5' -61.3 NC_006273.1 + 96080 0.72 0.403527
Target:  5'- -cCUGGCCgaGGcGAGUCCGCGGUCGc -3'
miRNA:   3'- gaGGCCGGgaCC-UUCAGGUGCCGGUu -5'
29951 5' -61.3 NC_006273.1 + 85666 0.73 0.364181
Target:  5'- -gCCGGCCCaGGAcaugacCCACGGCCGAg -3'
miRNA:   3'- gaGGCCGGGaCCUuca---GGUGCCGGUU- -5'
29951 5' -61.3 NC_006273.1 + 230852 0.74 0.33467
Target:  5'- -gCUGGUCCUGGGgaacgGGUCgGCGGCCGGu -3'
miRNA:   3'- gaGGCCGGGACCU-----UCAGgUGCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.